Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02434 ATGAGTCTCAAAAGCAATAACTTGTTATCTTTATTGGTTCCTATTGCTGCAATTTTTGCATCATTGTATCTTATCAATCCAAATCCACAGTTTTTCACAACTTTGTCACCATCATCTATTTACTTTGGAAGAAACCACCATCATCATCATAGGCCACACAGAAAACACCCTGACAATGAGAATAATGATTCTGTTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAACACCAATACAACTTCTTATCTTTGCGTCGATCGAAAAGGGTGTTGTAATTTCACAACTGTGCAACAAGCTGTTAATGCAGTTCCTGATTTCAGCTTCAAAAGAACCATAATATGGATAAACAGTGGCTTCTACTATGAGAAAGTCACGGTTCCAAAAACCAAACCAAACATTACGTTTCAAGGACAAAGCTACACTTCAACTGCAATTGCATGGAATGATACAGCAAAATCTGCTAATGGCACGTTTTATAGTGGTTCCGTACAAGTTTTTGCCTCTAACTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCGATTCCAGCTCCTGGGGCTGAAGGAGCACAAGCAGTAGCCATGAGGATATCAGGAGATCAAGCTGAATTCAGAGGCTGTGGATTCTTTGGAGCTCAAGACACCCTTCACGACGATAAGGGTCGTCATTACTTCAAAGATTGCTATATACAAGGATCCATTGATTTCATCTTTGGCAATGCAAGGTCACTCTACGAGAATTGTCAACTAGTTTCTATAGCAAATCCAGTACCTCCAGGACAAAAGAACATAAACGGAGCAGTGACTGCTCATGGTAGAGTTTCAGGAGATGAAAACACAGGATATGTATTTGTGAACAGTACAATAGGAGGCAATGGTAGAATATGGTTAGGTAGGGCATGGAGACCATATTCTCGTGTCATTTTTGCATTCACAGTTATGTCTGATATTATTGCACCTGAAGGTTGGAATGACTTCAATGACCCTACAAGAGACCAGACTATATTTTATGGAGAGTACAATTGTTCTGGGCCAGGGGCTAATGTGAATACCAGGGCCCCTTATGTACAGAGATTGAATGATACACAAGCTTTTCCATTCCTCAGTACAAGTTTTATTGATGGTGATCTATGGTTGGAAACTTAG 1152 0.3967 MSLKSNNLLSLLVPIAAIFASLYLINPNPQFFTTLSPSSIYFGRNHHHHHRPHRKHPDNENNDSVCDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQQAVNAVPDFSFKRTIIWINSGFYYEKVTVPKTKPNITFQGQSYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPIPAPGAEGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQKNINGAVTAHGRVSGDENTGYVFVNSTIGGNGRIWLGRAWRPYSRVIFAFTVMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANVNTRAPYVQRLNDTQAFPFLSTSFIDGDLWLET 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02434 383 SUPERFAMILY Pectin lyase-like 83 381 IPR011050 -
Vifa5g02434 383 Pfam Pectinesterase 86 378 IPR000070 GO:0030599|GO:0042545
Vifa5g02434 383 FunFam Pectinesterase 78 383 - -
Vifa5g02434 383 Gene3D - 77 383 IPR012334 -
Vifa5g02434 383 ProSitePatterns Pectinesterase signature 2. 232 241 IPR033131 -
Vifa5g02434 383 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02434 Vifa-Chr5 804835176 804836708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02434 55 382 Carbohydrate Esterase AT1G05310 71.037 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02434 - - gmx:100806629 660.603