Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02431 ATGGCTTCAAGTGTTGAAAAACCAAACCAAACCACTACTCAACTAGAACCACTCCCACCATCACCACATCATCATCATCATCATCATCATCATCATCATCAAAATAATCAAATTTCATTTGGAATGATGCAATCTTCTTCATCAAACTCTCTCCCTGGAAACTTCATAAATAAAGATTCAGCTTATGATTTGGGTGAATTGGATCAAGCACTTTTTCTCTATCTTAATGGACAAACAGACCCATCAAGTATTCAAGACCAAAAACAAAATTCAACATCAGGAATGAGGCCACCAACTCTTAACATTTTTCCTTCTCAGCCTATGCATGTAGAGCCATCATCTTCCAATTCAAAGGCTAACATGGAGTTAGTTTCTTCGGAAACAAGTGGATCAAGGAAAACCAATCTACTACCAAAACAAGTCTTCTCTGGCTCTGAACCATCCAAAACTGTCAAGCAGCCAGAGAGAAATCATGGTAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCCAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGGAAAAGCAGGTTGAGAAAAAAGGCATATATTCAGCAGCTTGAGTCAAGCAGAATCAGGCTTAGTCAAATGGAACAAGAGCTACAGCGTGCTAGAAATCAAGGCATGTTCCTTGGTGGAGGTGCAGTTTTGGGAGGAGAACAAAACCTTCCTATTTCAATGAATAGCATTAGCTCAGAGGGTGCGATGTTTGATGTGGAATATGCGAGGTGGCTAGAGGAGCACCACCGTGTAGCATGTGAACTAAGAGCGGCGGTTCAAGAGCACATTCATGAGGATGAACTTAGAATGTTTGTAGAGAAATTCTTGGCACAATTTGATCAACTAATGCATCTTAAGAGCTTAGTTGCAAAAGCAGACATATTCCATCTTGTTTCTGGCATGTGGGTGACCCCGGCAGAACGTTGCTTCTTGTGGATTGGTGGATTCAAACCTTCTGAACTCATCAAGATTATTGTGAGTCAAATTGAGCCTGTAACGGAGCAACAAATAATGAGTATATACGGATTGCAACAATCTACACAAGAGGGTGAAGATGCTCTCTCACAAGGACTTGAAGCTTTCAATCAATCTATTTCAGAAACTTTATCATCAGAGTCACTAAGCTATCCTCCAAATATGAATAACTACATGGAACAATTGGCTAGGGCCATGAACAAACTTTCCACTCTTGAAAGTTTTGTTAGAGAGGCAGATAATCTACGACACCAAACCATTCATCGTCTGAATCAGATCCTAACGACGCGACAAGCAGCAAGATGTTTTGTTGCCATGGCGGAGTACTTCCATCGCATGCGAGCATTGAGTTCTCTCTGGTTGGCACGCCCTCGCCAAGAATAG 1407 0.4151 MASSVEKPNQTTTQLEPLPPSPHHHHHHHHHHHQNNQISFGMMQSSSSNSLPGNFINKDSAYDLGELDQALFLYLNGQTDPSSIQDQKQNSTSGMRPPTLNIFPSQPMHVEPSSSNSKANMELVSSETSGSRKTNLLPKQVFSGSEPSKTVKQPERNHGKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIRLSQMEQELQRARNQGMFLGGGAVLGGEQNLPISMNSISSEGAMFDVEYARWLEEHHRVACELRAAVQEHIHEDELRMFVEKFLAQFDQLMHLKSLVAKADIFHLVSGMWVTPAERCFLWIGGFKPSELIKIIVSQIEPVTEQQIMSIYGLQQSTQEGEDALSQGLEAFNQSISETLSSESLSYPPNMNNYMEQLARAMNKLSTLESFVREADNLRHQTIHRLNQILTTRQAARCFVAMAEYFHRMRALSSLWLARPRQE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02431 468 FunFam BZIP family transcription factor 176 225 - -
Vifa5g02431 468 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Vifa5g02431 468 ProSiteProfiles DOG1 domain profile. 250 464 IPR025422 GO:0006351|GO:0043565
Vifa5g02431 468 PANTHER TRANSCRIPTION FACTOR TGA9 91 467 - -
Vifa5g02431 468 Gene3D - 176 226 - -
Vifa5g02431 468 MobiDBLite consensus disorder prediction 79 150 - -
Vifa5g02431 468 SMART brlzneu 173 246 IPR004827 GO:0003700|GO:0006355
Vifa5g02431 468 Pfam Seed dormancy control 269 343 IPR025422 GO:0006351|GO:0043565
Vifa5g02431 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Vifa5g02431 468 MobiDBLite consensus disorder prediction 151 179 - -
Vifa5g02431 468 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g02431 468 CDD bZIP_HBP1b-like 177 229 - -
Vifa5g02431 468 MobiDBLite consensus disorder prediction 79 179 - -
Vifa5g02431 468 Coils Coil 196 223 - -
Vifa5g02431 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Vifa5g02431 468 MobiDBLite consensus disorder prediction 1 18 - -
Vifa5g02431 468 Pfam bZIP transcription factor 177 212 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02431 Vifa-Chr5 803634768 803638577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02431 53 468 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 58.636 1.54e-176 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g02431 DOG1 3.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02431 K14431 - gmx:100799713 673.315