Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02430 ATGGCTTCAAGTGTTGAAAAACCAAACCAAACCACTACTCAACTAGAACCACTCCCACCATCACCACATCATCATCATCATCATCATCATCATCATCATCAAAATAATCAAATTTCATTTGGAATGATGCAATCTTCTTCATCAAACTCTCTCCCTGGAAACTTCATAAATAAAGATTCAGCTTATGATTTGGGTGAATTGGATCAAGCACTTTTTCTCTATCTTAATGGACAAACAGACCCATCAAGTATTCAAGACCAAAAACAAAATTCAACATCAGGAATGAGGCCACCAACTCTTAACATTTTTCCTTCTCAGCCTATGCATGTAGAGCCATCATCTTCCAATTCAAAGGCTAACATGGAGTTAGTTTCTTCGGAAACAAGTGGATCAAGGAAAACCAATCTACTACCAAAACAAGTCTTCTCTGGCTCTGAACCATCCAAAACTGTCAAGCCAGAGAGAAATCATGGTAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCCAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGGAAAAGCAGGTTGAGAAAAAAGGCATATATTCAGCAGCTTGAGTCAAGCAGAATCAGGCTTAGTCAAATGGAACAAGAGCTACAGCGTGCTAGAAATCAAGGCATGTTCCTTGGTGGAGGTGCAGTTTTGGGAGGAGAACAAAACCTTCCTATTTCAATGAATAGCATTAGCTCAGAGGGTGCGATGTTTGATGTGGAATATGCGAGGTGGCTAGAGGAGCACCACCGTGTAGCATGTGAACTAAGAGCGGCGGTTCAAGAGCACATTCATGAGGATGAACTTAGAATGTTTGTAGAGAAATTCTTGGCACAATTTGATCAACTAATGCATCTTAAGAGCTTAGTTGCAAAAGCAGACATATTCCATCTTGTTTCTGGCATGTGGGTGACCCCGGCAGAACGTTGCTTCTTGTGGATTGGTGGATTCAAACCTTCTGAACTCATCAAGATTATTGTGAGTCAAATTGAGCCTGTAACGGAGCAACAAATAATGAGTATATACGGATTGCAACAATCTACACAAGAGGGTGAAGATGCTCTCTCACAAGGACTTGAAGCTTTCAATCAATCTATTTCAGAAACTTTATCATCAGAGTCACTAAGCTATCCTCCAAATATGAATAACTACATGGAACAATTGGCTAGGGCCATGAACAAACTTTCCACTCTTGAAAGTTTTGTTAGAGAGGCAGATAATCTACGACACCAAACCATTCATCGTCTGAATCAGATCCTAACGACGCGACAAGCAGCAAGATGTTTTGTTGCCATGGCGGAGTACTTCCATCGCATGCGAGCATTGAGTTCTCTCTGGTTGGCACGCCCTCGCCAAGAATAG 1404 0.4145 MASSVEKPNQTTTQLEPLPPSPHHHHHHHHHHHQNNQISFGMMQSSSSNSLPGNFINKDSAYDLGELDQALFLYLNGQTDPSSIQDQKQNSTSGMRPPTLNIFPSQPMHVEPSSSNSKANMELVSSETSGSRKTNLLPKQVFSGSEPSKTVKPERNHGKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIRLSQMEQELQRARNQGMFLGGGAVLGGEQNLPISMNSISSEGAMFDVEYARWLEEHHRVACELRAAVQEHIHEDELRMFVEKFLAQFDQLMHLKSLVAKADIFHLVSGMWVTPAERCFLWIGGFKPSELIKIIVSQIEPVTEQQIMSIYGLQQSTQEGEDALSQGLEAFNQSISETLSSESLSYPPNMNNYMEQLARAMNKLSTLESFVREADNLRHQTIHRLNQILTTRQAARCFVAMAEYFHRMRALSSLWLARPRQE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02430 467 Pfam Seed dormancy control 268 342 IPR025422 GO:0006351|GO:0043565
Vifa5g02430 467 Gene3D - 175 225 - -
Vifa5g02430 467 MobiDBLite consensus disorder prediction 79 178 - -
Vifa5g02430 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Vifa5g02430 467 Coils Coil 195 222 - -
Vifa5g02430 467 Pfam bZIP transcription factor 176 211 IPR004827 GO:0003700|GO:0006355
Vifa5g02430 467 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Vifa5g02430 467 FunFam BZIP family transcription factor 175 224 - -
Vifa5g02430 467 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g02430 467 ProSiteProfiles DOG1 domain profile. 249 463 IPR025422 GO:0006351|GO:0043565
Vifa5g02430 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700|GO:0006355
Vifa5g02430 467 MobiDBLite consensus disorder prediction 1 18 - -
Vifa5g02430 467 MobiDBLite consensus disorder prediction 150 178 - -
Vifa5g02430 467 CDD bZIP_HBP1b-like 176 228 - -
Vifa5g02430 467 PANTHER TRANSCRIPTION FACTOR TGA9 91 466 - -
Vifa5g02430 467 SMART brlzneu 172 245 IPR004827 GO:0003700|GO:0006355
Vifa5g02430 467 MobiDBLite consensus disorder prediction 79 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02430 Vifa-Chr5 803634768 803638577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02430 53 467 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 59.729 1.58e-177 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g02430 DOG1 3.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02430 K14431 - gmx:100799713 676.396