Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02418 ATGCTACATGAAGAACATAAGCCAGATGAAGGAACAGAAAGACCTAGGATAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGACGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG 561 0.4474 MLHEEHKPDEGTERPRIKPYALEEACTVWEGVLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02418 186 Pfam Ribosomal Proteins L2, C-terminal domain 44 161 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa5g02418 186 NCBIfam 50S ribosomal protein L2 11 185 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa5g02418 186 SMART Ribosomal_L2_C_2 44 163 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa5g02418 186 PANTHER RIBOSOMAL PROTEIN L2 42 185 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa5g02418 186 MobiDBLite consensus disorder prediction 135 186 - -
Vifa5g02418 186 FunFam 50S ribosomal protein L2 106 186 - -
Vifa5g02418 186 Gene3D - 27 106 IPR014722 -
Vifa5g02418 186 Gene3D Ribosomal protein L2, domain 3 107 185 IPR014726 -
Vifa5g02418 186 FunFam 50S ribosomal protein L2, chloroplastic 31 106 - -
Vifa5g02418 186 SUPERFAMILY Translation proteins SH3-like domain 44 183 IPR008991 -
Vifa5g02418 186 ProSitePatterns Ribosomal protein L2 signature. 128 139 IPR022671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02418 Vifa-Chr5 799749926 799750637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02418 44 146 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 45.455 1.53e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02418 K02886 - csin:114298497 315.464