Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02415 ATGGAACAACCTACATTAGGATTGAGTGGATCCATTCACCTCGATTCCGTTCAATTTAACGATGAAATTCAAGGAATTATGGTGCCGGCGCCGGCGCCGGCACCGGAAAACGCAAGCTCATTCACAGCTCTACTGGAGCTTCCCCCAACGCAGGCCGTAGAGCTTCTTCACTTGCCGGATTGCGACGGAACAGACTCCCGGAGACTGCCTTGCTGCCACGTCAGCGTGAATCAGAAACCCTATCTTCCGAGTTCTTCCGACGGTAATAATTTGACCTTCCCTGTCAACGCTGCTTTGATTGAACGTGCCGCGAAATTCTCCGTGTTCGCCGGAGATATTTCCACCGGAGAGGCGCGGCTGTTTTCACCGGTGTCTGAACCGAATTTGGAAATTGTGAAGAATGAACCTCAAGATACCGATTCAAACCCTTGCTCGACTCAAGAGTGCGTTTCCGATCCAGCTGTTGAAAACAAGAATCAGAGAACCGTGAAGAGAAAGGAGCCAGAGAAGAAGGGTAAAGCGTGCTCGAAGAAGAGCAAGAGCATCGCCGATGATACCTCCGGTGAGGGTGAGAAGCTTCCCTACGTCCATGTTCGCGTTCGACGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAACGAGCTAGGAGAGAGAAGATTAATGCACGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGTGACAAGATATCTGGAACGGCATTGGTTCTTGATGAAATCATCAACCATGTGCAAACTCTACAACGTCAAGTGGAGATCTTATCGATGAAACTGGCAGCAGTTAATCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCTACTGATGGGCCATCTTTAATGGACAGCATGTTACCTAGCATGGCTACGCCTCTTGTGTGGCCAGAAATCCCACTCAACAGTAACAGACAACATTATCAACAGCAGTGGCCAGTTGATGATGCATTCCATCAACCACTTTGGGGAAGGGAAGAAGACAACCATAATTTCATGACTCAGGAAAACTCACTTTTGAGTTATGACTCCTCGGCAAACTCAGCATCTCTACACTCAAATCAATTGAAGATGGAGCTCTGA 1098 0.4818 MEQPTLGLSGSIHLDSVQFNDEIQGIMVPAPAPAPENASSFTALLELPPTQAVELLHLPDCDGTDSRRLPCCHVSVNQKPYLPSSSDGNNLTFPVNAALIERAAKFSVFAGDISTGEARLFSPVSEPNLEIVKNEPQDTDSNPCSTQECVSDPAVENKNQRTVKRKEPEKKGKACSKKSKSIADDTSGEGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLATDGPSLMDSMLPSMATPLVWPEIPLNSNRQHYQQQWPVDDAFHQPLWGREEDNHNFMTQENSLLSYDSSANSASLHSNQLKMEL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02415 365 CDD bHLH_AtBPE_like 194 279 - -
Vifa5g02415 365 Gene3D - 201 274 IPR036638 GO:0046983
Vifa5g02415 365 MobiDBLite consensus disorder prediction 158 189 - -
Vifa5g02415 365 Coils Coil 244 264 - -
Vifa5g02415 365 SMART finulus 210 260 IPR011598 GO:0046983
Vifa5g02415 365 MobiDBLite consensus disorder prediction 133 189 - -
Vifa5g02415 365 MobiDBLite consensus disorder prediction 133 157 - -
Vifa5g02415 365 FunFam transcription factor bHLH48-like isoform X1 201 273 - -
Vifa5g02415 365 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
Vifa5g02415 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 273 IPR036638 GO:0046983
Vifa5g02415 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Vifa5g02415 365 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 122 349 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02415 Vifa-Chr5 797233263 797237304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02415 12 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.618 9.04e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g02415 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02415 - - vun:114168708 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02415 5 797233263 797237304 Vifa5g02415 5 797233263 797237304 ECH