Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02413 ATGGATTTGAATTCTCGTTATCAAGAACTCCAACAAAACCAAAGGTTTCCTTCTTCTGGTGCAACTTCAAGCATGCTTGTTGGTTCTTCTATGGGAATGGATCAACCAAGTAGTTTTTCTGCTGCTCATTTCTCCAACAACACCATCTCCTTTCAAAATGATTATGCCACTATGAAAGGAGTTGAAAACTATGATGGGGTGAATAACAGTAGTGACGGTGGACTTACTCTATCTATGAACATATTGAAGAATCAAATCGGATTCTCACAAAGCTCTTCTTCCTTGGGGATATTATCACACAACTCCAAAATGAGAAGTGATGGTCATAAATTCTTGTATGGTTATAATGATCAGAATGTAGAAGTAGGAAATCAAGTAAATACATTATCACATCACATGAGTTTGCCAAGAAAGTCATCAGAAATGTTTGTTATGGAGAATTTACACCAGTTCCCAGATTCTTCTGTTCCTAGCAGTATTAGAGCAAAGCGAGGCTGCGCAACGCATCCCAGAAGCGTTGCGGAAAGGGTAAGAAGAACTCGAATAAGTGAAGGAATGAAGAAGTTGCAAGAGCTTGTTCCAAACACTGACAAGCAAACTTGCACATCAGAAATGTTGGAATTGGCTGTAACGTACATTAAAGATCTTCAAAAACAATTAAAGATTATGAGTGCAAAAAGAGCTAAATGTAAATGCAAAAATCTGAAATGA 711 0.3741 MDLNSRYQELQQNQRFPSSGATSSMLVGSSMGMDQPSSFSAAHFSNNTISFQNDYATMKGVENYDGVNNSSDGGLTLSMNILKNQIGFSQSSSSLGILSHNSKMRSDGHKFLYGYNDQNVEVGNQVNTLSHHMSLPRKSSEMFVMENLHQFPDSSVPSSIRAKRGCATHPRSVAERVRRTRISEGMKKLQELVPNTDKQTCTSEMLELAVTYIKDLQKQLKIMSAKRAKCKCKNLK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02413 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 231 IPR036638 GO:0046983
Vifa5g02413 236 SMART finulus 172 222 IPR011598 GO:0046983
Vifa5g02413 236 Pfam Helix-loop-helix DNA-binding domain 172 217 IPR011598 GO:0046983
Vifa5g02413 236 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 230 - -
Vifa5g02413 236 FunFam Transcription factor bHLH130 family 167 236 - -
Vifa5g02413 236 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g02413 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Vifa5g02413 236 Coils Coil 213 233 - -
Vifa5g02413 236 Gene3D - 167 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02413 Vifa-Chr5 795369579 795371235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02413 37 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.755 5.00e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g02413 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02413 - - psat:127126267 358.221