Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02409 ATGTCTTCACTCTGTACATTCCTCTTCCTTCTTTCTCTAACCTTCACCCTCACTTCATCTTCATCTTCATCACAAACCCAAACCCTTCTTTCCTTCAAATCCACCATTCAAGACACCAAAAACACATTATCAACATGGTCCAACACTTCCCTAAACCACTTCTGCAACTGGACAGGAATCTCCTGTTCTTCAACTTCATCACCATTCTCAGTAACCTCTGTCAACCTCCAAAACCTTAACCTCTCGGGTGATATCTCATCTTCCATATGCAACCTCCCGAATCTCTCTGATCTCAACCTTGCTAACAATGCATTTAACCAACCTATCCCTCTTCATCTCTCTCAATGTAGTTCATTGAAAAGTTTGAATCTTAGTAATAATCTCATCTGGGGTACTATCCCTTCTCAGATTTCGATGTTTGTTGCTTTGTCAGTGCTTGATTTGAGTAGAAACCGTATAGAGGGAAATATTCCAGATGCTTTTGGTTCTTTGAAGAATCTTCAAGTGCTTGATATGAATACTAACTTGTTTTCTGGTGATGTGCCTAAGGTGTTTGGTAATTTGACTAAACTAGAAGTTCTTGATTTGTCTTTGAATCCTTACTTGGTGAGTGAGATTCCTGAGGATATTGGTGAGCTTGGGAATTTGAAGAAACTTCTTTTGCAGACTTCGGGTTTCCAAGGTGAAATTCCTGAGTCTTTGAAGGGTTTGAATAAGCTTTTGGGTTTGTTTCCGGATGGTTTGTGTAGAGGAGGAAAAGGGCTTATAAATTTAAGTCTTCATACAAATGGGTTTACTGGGTTGATACCAAATTCAACTAGTGAATGTAAGAGTCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTCTCTGGTGATTTTCCTGTTGGGTTGTTTTCACTTCCTAGAATTAAGCTCATTAGAGGTGAAAACAATAGATTTACAGGAAAAATACCTGACTTAATCTCAGAAGCTTCTCAGTTAGAGCAAGTTCAGCTTGATAATAATCTTTTTGATGGTGAAATTCCTTCAGGTCTTGGGTTAGTTAAAAGCTTATATAGGTTTTCTGCTTCTTTAAATCATTTCTATGGTGAAATTCCTCCTAATTTTTGTGATTCACCCGTTATGAGTATCATGAATCTCTCTCACAATTCTCTTTTTGGTGATATCCCTCAGCTGAAAAAATGCAGGAAATTAGTTTCACTTTCTTTAGCTGATAACAGTTTAACAGGAGAAATTCCTAATTCTCTAGCTGAACTACCTGTGCTTACTTACCTTGATCTCTCGGATAACAATCTCACTGGTTCAATTCCACAAGGTCTTCAAAACTTGAAGCTTGCACTTTTCAATGTTTCCTATAATCAGTTATCTGGTAGAGTACCGTACTCGTTGATTTCCGGTCTTCCTGCGTCATTTTTGGAAGGAAATTCTGGTCTTTGTGGTCCTGGATTGCCAAATTCATGTTCTGATGATAACAAGCCAAGACATCACGTTGCCTCTGGTTTTACAACTTTGGTGCGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAATTTCTCTTGTTGCTGGTGGATTTATATTGTATAGGAGATCTAGCAAAGGGAATGAAGTTGCGATATGGCGCTCGGTGTTCTTCTATCCTCTCAGAATTACTGAACATGATCTTCTTATAGGGATGAATGATAAAAGCTCAATAGGAAATGGAATTTTCGGTAATGTTTATGTTGTGAGCTTACCTAGTGGTGATTTAGTATCTGTAAAGAAGTTGGTCAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTTAAAACTTTGGCTAAAATCAGGCACAAGAATATTGTTAAGATTCTTGGATTCTGTCACTCTGATGAGTCGGTTTTTCTCATTTATGAATACTTGCATGGTGGAAGCTTAGGGGACTTGATTTGTAGTCAGAATTTTCAGCTGCATTGGGGAGTTCGATTGAAGATTGCTATCGGAGTTGCTCAAGGACTTGCATATCTTCACAAGGATTATGTTCCTCACTTGGTTCATAGAAATGTCAAGTCAAAAAACATTCTGTTGGATGTTAACTTTGAGCCAAAACTTACACATTTTGCTCTTGATAGGATTGTTGGAGAAGCTGCATTTCAATCAATTTTGGATTCTGAAGCTGCATCTTCATGTTACATTGCTCCAGAATATGGATATAATAAGAAAGCAAGTGAACAATTGGATGTGTACAGCTTTGGTGTTGTATTGCTAGAGCTAATTTGTGGAAGACAGGCTGAGAAAACAGATTCAAGTGATGACTCTTCACTTGACATAGTGAAATGGGTTAGAAGGAAAGTGAACATTACTAATGGGGTGAACCAAGTTCTTGACACTAGAATATCAGATTCTTGTCACCAAGAAATGGTTGGTGCTTTAGATATTGCTCTAAACTGCACTTCTGTGGTACCTGAGAAAAGGCCATCAATGTTAGAAGTTGTTAGAGGTCTTCAGTCTCTTGAATCAAGGACTTGTATTGCAAATTTGCAGGGTCCCAATGATGAACCCTCTATTCCAGTTTGA 2556 0.3815 MSSLCTFLFLLSLTFTLTSSSSSSQTQTLLSFKSTIQDTKNTLSTWSNTSLNHFCNWTGISCSSTSSPFSVTSVNLQNLNLSGDISSSICNLPNLSDLNLANNAFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISMFVALSVLDLSRNRIEGNIPDAFGSLKNLQVLDMNTNLFSGDVPKVFGNLTKLEVLDLSLNPYLVSEIPEDIGELGNLKKLLLQTSGFQGEIPESLKGLNKLLGLFPDGLCRGGKGLINLSLHTNGFTGLIPNSTSECKSLERFQVQNNGFSGDFPVGLFSLPRIKLIRGENNRFTGKIPDLISEASQLEQVQLDNNLFDGEIPSGLGLVKSLYRFSASLNHFYGEIPPNFCDSPVMSIMNLSHNSLFGDIPQLKKCRKLVSLSLADNSLTGEIPNSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSYNQLSGRVPYSLISGLPASFLEGNSGLCGPGLPNSCSDDNKPRHHVASGFTTLVRALISLAFVAGISLVAGGFILYRRSSKGNEVAIWRSVFFYPLRITEHDLLIGMNDKSSIGNGIFGNVYVVSLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNIVKILGFCHSDESVFLIYEYLHGGSLGDLICSQNFQLHWGVRLKIAIGVAQGLAYLHKDYVPHLVHRNVKSKNILLDVNFEPKLTHFALDRIVGEAAFQSILDSEAASSCYIAPEYGYNKKASEQLDVYSFGVVLLELICGRQAEKTDSSDDSSLDIVKWVRRKVNITNGVNQVLDTRISDSCHQEMVGALDIALNCTSVVPEKRPSMLEVVRGLQSLESRTCIANLQGPNDEPSIPV 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02409 851 ProSiteProfiles Leucine-rich repeat profile. 421 444 IPR001611 GO:0005515
Vifa5g02409 851 SUPERFAMILY Protein kinase-like (PK-like) 561 827 IPR011009 -
Vifa5g02409 851 ProSitePatterns Protein kinases ATP-binding region signature. 564 587 IPR017441 GO:0005524
Vifa5g02409 851 Gene3D Ribonuclease Inhibitor 184 239 IPR032675 -
Vifa5g02409 851 Gene3D Phosphorylase Kinase; domain 1 553 633 - -
Vifa5g02409 851 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 634 836 - -
Vifa5g02409 851 Gene3D Transferase(Phosphotransferase) domain 1 634 842 - -
Vifa5g02409 851 Gene3D Ribonuclease Inhibitor 22 183 IPR032675 -
Vifa5g02409 851 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Vifa5g02409 851 Pfam Leucine rich repeat 143 199 IPR001611 GO:0005515
Vifa5g02409 851 SUPERFAMILY L domain-like 21 242 - -
Vifa5g02409 851 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 549 633 - -
Vifa5g02409 851 Pfam Protein kinase domain 560 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02409 851 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Vifa5g02409 851 FunFam Leucine-rich repeat family protein 24 182 - -
Vifa5g02409 851 SMART LRR_typ_2 419 442 IPR003591 -
Vifa5g02409 851 SMART LRR_typ_2 164 187 IPR003591 -
Vifa5g02409 851 SMART LRR_typ_2 188 213 IPR003591 -
Vifa5g02409 851 SMART LRR_typ_2 140 163 IPR003591 -
Vifa5g02409 851 SMART LRR_typ_2 92 116 IPR003591 -
Vifa5g02409 851 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 830 - -
Vifa5g02409 851 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 235 490 - -
Vifa5g02409 851 Gene3D Ribonuclease Inhibitor 240 496 IPR032675 -
Vifa5g02409 851 ProSiteProfiles Protein kinase domain profile. 558 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02409 851 SUPERFAMILY RNI-like 206 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02409 Vifa-Chr5 793528406 793531246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02409 29 831 Receptor kinase-like Gene Family AT5G06940 58.621 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g02409 Pkinase 3.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02409 - - gmx:100794428 1291.17