Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02406 ATGGAGTCTCCCGATGAGATGGGATGCCAGGCACCAGAACGTCCTATACTTTGCGTTAACAATTGTGGTTTCTTCGGAAGGGAAGCTACCATGAACATGTGTTCCAAGTGCTACAAGGACACTTTGTTGACCCAGGAGCAGGACAAACTTGCTGCGACATCAGTTGAAAGCATTGTGAATGGCAATGGAAAGCTAGCTGTGACTGCAGGTGCTGTTGATTTACAAGTTGGAAATGTGGAGGTCAATACAGCATGTCCCGAAGTTCCAGATAATTCTGTCTTTGGCGAGAGTGTGGAGAAGACGAAAGCCAAGACTGGTCCTAGCAGATGTGCCACTTGCCGGAAACGTGTTGGATTAACTGGTTTCAGCTGCAAATGCGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGAATGCCCTTTTGATTATAGAACTGTTGGTCAGGAAGCCATAGCGGAAGCTAACCCAGTAATTAAGGCAAATAAACTTGATAAAATCTAG 510 0.4549 MESPDEMGCQAPERPILCVNNCGFFGREATMNMCSKCYKDTLLTQEQDKLAATSVESIVNGNGKLAVTAGAVDLQVGNVEVNTACPEVPDNSVFGESVEKTKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHECPFDYRTVGQEAIAEANPVIKANKLDKI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02406 169 SMART AN1_Zf_4 110 147 IPR000058 GO:0008270
Vifa5g02406 169 Gene3D - 90 165 IPR035896 -
Vifa5g02406 169 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 169 - -
Vifa5g02406 169 FunFam Zinc finger AN1-type containing 6 86 165 - -
Vifa5g02406 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Vifa5g02406 169 Pfam AN1-like Zinc finger 110 146 IPR000058 GO:0008270
Vifa5g02406 169 ProSiteProfiles Zinc finger AN1-type profile. 104 150 IPR000058 GO:0008270
Vifa5g02406 169 SUPERFAMILY AN1-like Zinc finger 97 164 IPR035896 -
Vifa5g02406 169 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Vifa5g02406 169 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Vifa5g02406 169 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Vifa5g02406 169 Gene3D - 6 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02406 Vifa-Chr5 790835807 790836316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02406 5 169 C2H2 Transcription Factor Family AT3G52800 42.857 3.25e-39 129