Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02404 ATGGCGCCAAAGAACAAAGCTAGGGTTTCCGATGACGAAGAAATGGAAGATCAACCTCAAAAAAGTCTCTACCAGGTTCTTGGATTGGAGAAAACGGCCACTCAACAGGAAATTAAGAAGGCATATTACAAGTTGGCGTTGCGGCTTCACCCGGATAAGAACCCTGATGACGAGGAGGCCAAAGAGAAATTCCAACAGCTGCAAAAGGTTATTTCGATTCTCGGGGATGAAGAGAAACGAGCCCTTTATGATCAGACTGGTTGTATTGATGATGATGATCTTGCAGGAGATGTTCAGAATCTGCACGAGTTTTTCAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTACAGGGGATCTGACTCCGAGAAGAATGACTTGATTGATCTGTACAAGAAGTGCAAGGGGAATATGAACAAGCTTTTCTGTTCAATGCTTTGTTCCGATGCTAAACTTGACTCACACCGATTCAAGGACATTCTTGACGAGGCTATAGCTGCTGGAGAACTTAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTGTCAGAAACCAAACCACCTACAAGTCCTTTAAAGAGGAAGGCAAGGTCGAATAAGCAGTCGGAAACAGATCTATTTGCAGTCATATCACAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCGTCTCTAGTATTGAAGTATGGTGGTGACGATATGCAAGAGCCCTCTGAAGAGGAATTTGCAGCTGCACAGAAAAAGCTGGAGAAGGGAAGGTCCTCAAAAACACCAAAGCAATCAAAGCGAAAGTAA 828 0.436 MAPKNKARVSDDEEMEDQPQKSLYQVLGLEKTATQQEIKKAYYKLALRLHPDKNPDDEEAKEKFQQLQKVISILGDEEKRALYDQTGCIDDDDLAGDVQNLHEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNKLFCSMLCSDAKLDSHRFKDILDEAIAAGELKATKAYQKWAKEVSETKPPTSPLKRKARSNKQSETDLFAVISQRRNERKGQFDSMFSSLVLKYGGDDMQEPSEEEFAAAQKKLEKGRSSKTPKQSKRK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02404 275 MobiDBLite consensus disorder prediction 188 213 - -
Vifa5g02404 275 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 13 269 IPR042977 -
Vifa5g02404 275 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g02404 275 Gene3D DnaJ domain 6 100 IPR036869 -
Vifa5g02404 275 MobiDBLite consensus disorder prediction 246 275 - -
Vifa5g02404 275 MobiDBLite consensus disorder prediction 1 19 - -
Vifa5g02404 275 Pfam DnaJ domain 23 84 IPR001623 -
Vifa5g02404 275 CDD DnaJ 24 76 IPR001623 -
Vifa5g02404 275 MobiDBLite consensus disorder prediction 251 267 - -
Vifa5g02404 275 MobiDBLite consensus disorder prediction 195 209 - -
Vifa5g02404 275 PRINTS DnaJ domain signature 79 98 IPR001623 -
Vifa5g02404 275 PRINTS DnaJ domain signature 59 79 IPR001623 -
Vifa5g02404 275 PRINTS DnaJ domain signature 24 42 IPR001623 -
Vifa5g02404 275 PRINTS DnaJ domain signature 42 57 IPR001623 -
Vifa5g02404 275 SMART dnaj_3 21 79 IPR001623 -
Vifa5g02404 275 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Vifa5g02404 275 SUPERFAMILY Chaperone J-domain 20 93 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02404 Vifa-Chr5 790154713 790156943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02404 24 84 C2H2 Transcription Factor Family AT1G74250 39.394 6.02e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02404 K09529 - gmx:100793909 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02404 5 790154713 790156943 Vifa5g02404 5 790154713 790156943 ECH