Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02403 ATGGAGATAGAGAACAGTGAGATGAAGTCAAAGAAAATGGAAGAGTATGAAGTGATAGAACAAATTGGTAGAGGAGCGTTTGGTTCTGCTTTTCTCGTTCTTCATATGTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGTTTGGCCAAACAGGGAGAGAAATTCAAACGTACAGCACACCAAGAGATGAATCTGATTGCAAAACTGAATAACCCATATATTGTGGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCATGTTTGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCCGAGAGCATTAAGAAAGCTCGAGGATCGTTTTTTCCAGAGGAGAAGGTCTGCAAGTGGCTAACTCAACTTTTGATAGCTGTAGATTACTTGCATTCTAACCGTGTAATCCACCGGGATCTTAAGTGTTCCAACATATTCCTCACCAAGGACAACAATATTCGGCTAGGTGATTTCGGTCTTGCAAAGCGACTGAATGGAGAAGACCTCACTTCCTCGGTCGTTGGAACTCCAAATTACATGTGTCCGGAACTCCTTGCGGACATACCATATGGTTATAAATCTGACATATGGTCTCTCGGTTGCTGCATGTTTGAGATTGCTGCGCATCAATCAGCATTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAACCGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACTCTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCTGCGGAATTGTTAAGGCATCCACATTTACAACCATATGTTCTTCGGTGTCATAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTTAACTCAAAGGATAAAACAAAAAGATCCTCCAAAGCTAGTGGCGGCAAGGGCCATAACGACAGAGAAATGGGATTCGTAAATCGTTTGGAACTTGTTCATCCAATTGAGGGAAATGTCGATGTACATACAAGCTATCGTCCTAACAATTCCGAGGTAACAATCTCAACGAGCACAGAATACAACCCAGAGACCAAGATCATTGATCATACGATTACGGGCTACATAGTTGAGTCTTCTTCTAGTATTAGCAGCTCAAAAGATGGATCAACAACTTCCGAATCAACAACTTGCAGCGTGTGCAAGGAGGACTACAAAACTAGACCGGAAAGGGAAATATCTAATAATGGATTCTCCTCAAAAAGCATACACGATTCTCTGCATGAAAAAGAACAAAGATTTGCTGTAGCGACTACCGAAGTCGAAGGTACCTTCTCAAGTAAAGGTTTTGATAATGCCAAAGCACTTAGGGAAGATGCCAAACTTGATGACCTGAGAAAATCAACTACTTGCAGTGTGAGCAATAGCAGCACTGACAAAAATATTTGCATTAACGAGGAAAGCTCATCGCTTATTATGCATCCTCTAAGGGTTGAACAAAACAGTACTGAATCCAGAGAACACTCAGAGAAAAATGAAAACCGTGATTCTTTTACAGAAAAAGTCGTGCACACGAACTGCTTGTCGTCAGAGAGCAACGATCGTAGTGATATACTTTCCGTTAAGGAGGATGGCGTCAAAAAACTTAACATTATTTTCTCCACACAGAAAGAAGATGATAATGTAACAATGAATGGTGGTGATGAGGGCGACAAAGCAATCGACGATGCATTGTTGGATGGTCCATGCCAGGAAAGAGCCGATGCATTGGAATCTCTGCTCGAGTTATGTGCTCAGTTACTTAAACAAGATAAACTCGAAGAACTTGCAGGTGTGCTAAGACCATTTGGGAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGTTGACAAAGAGCCTCATATCTGCTCAAATGTTTAACCCTGAAAACTGA 1905 0.4131 MEIENSEMKSKKMEEYEVIEQIGRGAFGSAFLVLHMSEKKRYVLKKIRLAKQGEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHVCIVTGYCEGGDMAESIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNGEDLTSSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQSAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCHNASSNVLPVYPIVNSKDKTKRSSKASGGKGHNDREMGFVNRLELVHPIEGNVDVHTSYRPNNSEVTISTSTEYNPETKIIDHTITGYIVESSSSISSSKDGSTTSESTTCSVCKEDYKTRPEREISNNGFSSKSIHDSLHEKEQRFAVATTEVEGTFSSKGFDNAKALREDAKLDDLRKSTTCSVSNSSTDKNICINEESSSLIMHPLRVEQNSTESREHSEKNENRDSFTEKVVHTNCLSSESNDRSDILSVKEDGVKKLNIIFSTQKEDDNVTMNGGDEGDKAIDDALLDGPCQERADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLISAQMFNPEN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02403 634 CDD STKc_Nek 16 270 - -
Vifa5g02403 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vifa5g02403 634 FunFam serine/threonine-protein kinase Nek6 isoform X2 96 284 - -
Vifa5g02403 634 Gene3D Transferase(Phosphotransferase) domain 1 96 284 - -
Vifa5g02403 634 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 526 - -
Vifa5g02403 634 SUPERFAMILY Protein kinase-like (PK-like) 13 304 IPR011009 -
Vifa5g02403 634 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Vifa5g02403 634 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02403 634 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02403 634 FunFam Serine/threonine-protein kinase Nek6 1 95 - -
Vifa5g02403 634 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02403 634 MobiDBLite consensus disorder prediction 489 509 - -
Vifa5g02403 634 MobiDBLite consensus disorder prediction 490 509 - -
Vifa5g02403 634 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02403 Vifa-Chr5 790148664 790152515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02403 9 271 MAP Kinase Kinase Kinase AT3G13530 32.830 2.21e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa5g02403 Pkinase 1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02403 K08857 - gmx:100793379 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02403 5 790148664 790152515 Vifa5g02403 5 790148664 790152515 ECH