Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02401 ATGGCTGATCACTCTGACCGCTCTAATCATTTCTATTCATCATCACCATGTTTCTTCCGATTCAACCATATTTCACCATCTTCAAACCCTTCTTCATACCACCACCATTACCCTTTTCTTCATCGCCACAGCAACAATCACACCTTTTTCCAATATCATCAGATTCCTACTTCTCTACCACCTGTTCCTCCTCTTAGAGAAGAACTACCCCTTTTAAGCTTAATCCCAGAAAAACAACAACAACATGAGGAAGATATCCAGTTCCTTCCTTGCACTGCCATAGATTTTGAAGATGTTACCGTTGCACTTCACATGGGTTTGCCAAACCCCAGTGCTGCTGAAATGGCTTCTCTACTTTCTTCATCAGAGATCACTGTCCCTGATAAAGAGCACGCTGATGATTCTTCTTCCGGATTCATGATGCTTCATAATAACACCCTTAACAAAGGACAGTATTGGATCCCTACTCCTTCTCAGATTCTCAATGGTCCAACTCAGTTTTCTTGCACTGTTTGCTCCAAAACTTTCAACAGATATAACATCATGCAGCGCAGTGGAGAAAGTCTTTGA 570 0.4175 MADHSDRSNHFYSSSPCFFRFNHISPSSNPSSYHHHYPFLHRHSNNHTFFQYHQIPTSLPPVPPLREELPLLSLIPEKQQQHEEDIQFLPCTAIDFEDVTVALHMGLPNPSAAEMASLLSSSEITVPDKEHADDSSSGFMMLHNNTLNKGQYWIPTPSQILNGPTQFSCTVCSKTFNRYNIMQRSGESL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02401 189 PANTHER ZINC FINGER PROTEIN WIP2 34 183 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02401 Vifa-Chr5 787175973 787177725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02401 33 183 C2H2 Transcription Factor Family AT1G51220 37.952 9.76e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02401 - - gmx:100802907 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02401 5 787175973 787177725 Vifa5g02401 5 787175973 787177725 ECH
Vifa5g02401 5 787175973 787177725 Vifa1g00992 1 165324882 165327128 ECH
Vifa5g02401 5 787175973 787177725 Vifa3g00546 3 95301682 95303894 PCT