Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02393 ATGGAGAGAGGAGCGACAAAGAAGAAATCACCACCTCTCTCTTTGGAGCAATTCATCTCTATCACTGCCCCTCTTCTCGATTTGGAAAAGGAGGCTGAGATATCAAGTTCAATCGCCACTGGTGCGTCCAGAAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTCAATTTGAAGTGTGTCGATGTTCAGACAGGGCTTATGGGAAAGTCTCTGATCGAGCTCCAATCTACAAAAACAGACGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCCGCCCTTGGGCAAGGTGTAGTTTACAGATTGAAGGACTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGCTTAAACAGTCCCCTAAGGCTGGAAAAAGTCGCAAATGAGGTGACATATCACAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGTGTGCATAAGGGTCCTGCTTCTGATCTAATCCCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGATGTATCCTTCACATCCGTTAATAGAAATCTTGATCATTCTCAGAAAGATGCAATTTCAAAAGCCCTATCCTCGAAGAATGTTTTTTTGCTACACGGACCTCCTGGAACGGGAAAAACCACAACAGTTGTGGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTCGTTTGTGCTGCCTCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGGATTGGTCATCCTGCACGTTTATTGCCCCAAATACTGGACAGTGCACTGGATGCTCAGGTACTGCGAGGAGATAATAGTGGCCTTGCAAATGACATTCGGAAAGAAATGAAGGTATTGAATGGAAAGCTGTTAAAAACCAAAGAAAAAAATACAAGGAGGGAAATACAGAAGGAACTTAGGACTCTATCGAGAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTTACAGACGTAATTAAAACTGCAGATGTAATATTAACTACCCTGATTGGGGCTTTCACTAAGAAACTTGAGCGCACTTCATTTGATTTGGTGATTATCGACGAAGCTGCTCAAGCGCTTGAGATAGCATGTTGGATACCCCTGCTAAAGGGTACAAGATGTATACTTGCTGGAGATCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAGGGCTTAGGAAGAACCCTCTTCGAACGACTTGCAGAACTGTATGGAGAGGAAGTCACATCTATGCTCACCGTCCAGTATCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGTTAAGGCTCATCCAAGTGTTGCTGCACATACGCTATATGATCTTGAGAATGTGAAGAGGACATCTTCAACTGAACCAACCATTCTTCTCATAGACACAACTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGACAGCACCCTTAATGAAGGAGAATCTGAAGTTGCTATAGCTCATGCAAAGCGATTAGTGCAAAGCGGGGTGCTTCCTTCTGATATTGGAATCATTACCCCATATGCTGCTCAGGTTGTTTTACTCAAGATGTTGAAGAACAAGGAGAACTCGCTGAAGGATATTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTGGGTTTTCTGAGTGATCGCAGGCGAATGAATGTGGCCGTGACACGAGCAAGAAGACAATGCTGTATTGTCTGTGACACTGAGACAGTCAAGTGCATCCGAGTACCAGAATTAGTAGGCGAAATTCCCCAAGGAGGTTGA 1908 0.4266 MERGATKKKSPPLSLEQFISITAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKTDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKDALVQLSKGVHKGPASDLIPVLFGERQPTVSKKDVSFTSVNRNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQILDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTADVILTTLIGAFTKKLERTSFDLVIIDEAAQALEIACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGEEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHPSVAAHTLYDLENVKRTSSTEPTILLIDTTGCDMEEKKDEEDSTLNEGESEVAIAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVKCIRVPELVGEIPQGG 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02393 635 CDD DEXXQc_SMUBP2 196 444 - -
Vifa5g02393 635 Pfam AAA domain 197 411 IPR041677 GO:0004386
Vifa5g02393 635 Coils Coil 298 337 - -
Vifa5g02393 635 FunFam DNA-binding protein SMUBP-2 41 143 - -
Vifa5g02393 635 SMART AAA_5 211 433 IPR003593 GO:0016887
Vifa5g02393 635 NCBIfam IGHMBP2 family helicase 345 620 IPR004483 GO:0003677|GO:0005524
Vifa5g02393 635 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 16 621 - -
Vifa5g02393 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 618 IPR027417 -
Vifa5g02393 635 FunFam P-loop containing nucleoside triphosphate hydrolase 443 624 - -
Vifa5g02393 635 Gene3D - 41 143 - -
Vifa5g02393 635 Gene3D - 443 630 IPR027417 -
Vifa5g02393 635 SMART ultradead3 193 444 IPR014001 -
Vifa5g02393 635 Gene3D - 24 427 IPR027417 -
Vifa5g02393 635 CDD SF1_C_Upf1 445 621 IPR047187 -
Vifa5g02393 635 Pfam AAA domain 420 616 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02393 Vifa-Chr5 785229121 785236617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02393 170 380 Core DNA Replication Machinery Family AT1G08840 26.540 1.04e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02393 - K19036 gmx:100810545 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02393 5 785229121 785236617 Vifa5g02393 5 785229121 785236617 ECH