Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02392 ATGGATACATCATGCAAGAAATCTCCTTTGAAGCCATGGAAGAAAGGGCCAACAAGGGGCAAAGGTGGCCCCCAAAATGCTTCGTGCGAGTATCGAGGTGTTCGGCAACGAACATGGGGAAAATGGGTTGCCGAGATAAGAGAACCAAAGAAGAGAACTAGGCTATGGCTTGGTTCTTTCGCCACAGCAGAACAAGCTGCTATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTAAATCTTCCTCACCTGCAACCTCATTCTGTTTCAACTATCAAAACTGGGAAGTTCAAGTGGCTGCCTTCAAAGAATTTCATTTCAATGTTTCCTTCTTGTGGATTACTCAACATAAACGCTCAGCCTAGTGTTCATTTAATCCATCAGAGGCTACAGGAGTTTAAGCAGAATGCAGTTGCTGCAACTCAATCACTTTCTAGTTCGTCGGACGATCCAAAGAAAGAAGAAACTCAGAATGTACTAGACAGCAAGAAGAATCATGCAACTCAGAATGTACTAGACAGCAAGAAGAATCATGCAGATGATCCGCCAAAGAAAAATGATGTTGAGACTTCGGTGAATAAGATGGTTGGCAATCTGCAGGAGGAGAAACCACAGATAGACCTACATGAGTTTCTTCAACAGCTGGGAATACTGAAAGAAGAAACACACTCCTCGGAACAAACTGAGAGTTCAGGAAGTTCAACAGTGCATGAAGCTGTGTCAAGAGATGACAATGATCATTTGGGAATATTTTCAGACATGAATATTAATTGGGAGGCATTGATTGACATGCATGGAATTGAAGATATTCAGGAATCAGAAGCCACGCCGTTCGAAGCATTTGACCCGAATGACCAGCTTAATTTCTCAACTTCCATTTGGAATTTTTAA 906 0.426 MDTSCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEQAAMAYDEAARRLYGPDAYLNLPHLQPHSVSTIKTGKFKWLPSKNFISMFPSCGLLNINAQPSVHLIHQRLQEFKQNAVAATQSLSSSSDDPKKEETQNVLDSKKNHATQNVLDSKKNHADDPPKKNDVETSVNKMVGNLQEEKPQIDLHEFLQQLGILKEETHSSEQTESSGSSTVHEAVSRDDNDHLGIFSDMNINWEALIDMHGIEDIQESEATPFEAFDPNDQLNFSTSIWNF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02392 301 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Vifa5g02392 301 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Vifa5g02392 301 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Vifa5g02392 301 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Vifa5g02392 301 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Vifa5g02392 301 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Vifa5g02392 301 MobiDBLite consensus disorder prediction 146 194 - -
Vifa5g02392 301 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Vifa5g02392 301 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 266 - -
Vifa5g02392 301 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Vifa5g02392 301 MobiDBLite consensus disorder prediction 173 193 - -
Vifa5g02392 301 MobiDBLite consensus disorder prediction 1 28 - -
Vifa5g02392 301 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02392 Vifa-Chr5 785227742 785228647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02392 6 301 AP2-EREBP Transcription Factor Family AT3G57600 48.495 4.04e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02392 AP2 6.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02392 - - gmx:100801311 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02392 5 785227742 785228647 Vifa5g02392 5 785227742 785228647 ECH