Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02380 ATGTTTGTTACACTTTGCTTTTCTCTCATTGGTTGCAGTAGTATAAACCATACTATAGCACCTTCTTTGTCTTACTCTTATTCGCATCCATTTTCGCACAATCCAAGTTGCTCTCTAACGCGGAATTCCACTGAGAATTTTGAGTTTTCGACGAGCAAAGATGATCATATTTGGAACTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGTGATGGTGTTGTTGGTTTGTCGAATCATGGAGGTGGAACCGGTATCAGTTTGTTCATGCAACAAGGGAATAATAGTCAGTATAAAACTACTAGTTCGGAAAATCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGGCCTAGATTTGAAGCTCATTCGGGGGATTCAAGAGGAAATAACTCAGAGAATCTGAGAGTGTTTGAAGGTTTAGATGGTGGTAAGATGAGGAATATTTCAAGACTAGAGAGAATTGTTTGGGATATTGTTTCAGAATCTGTCCTTATTGTTTCGCTGACAACTCAGGAGTTTACCGGTGAAGTAATGGCATCAACTCAGGAATACTTGAAGAATCTGATTGAGAACAAGAAAGAAGAATTGGTCAGCCTTCAAAACTGGCTTGAGAAAAGGTCTGATCTTACCAAGGATAATCTTTCAAAGGGCAATAAAGTTCAATTAGAGATTTTACTTGCCATCAAGATGGGGCTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTAAGATGGTAGAGATTTTCTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATCTGCTCGGGAAATAAAGGGTTCTGTAGCTCTTGTATGTGTCCTGTTTGTTTGAACTTCGATTGTGCAAGTAACACTTGTAGCTGGATTGGATGCGATGTTTGTTCACACTGGTGCCATGCTGTATGTGGCCTCCAAAGGAAGCTTATCAAACCAGGGCCAAGCTTGAAGGGGCCTTCTGGGACCTCGGAAATGCAGTTTCATTGTATTGGATGTGGACATGCCTCAGAAATGTTTGGATTCGTCAAAGACGTCTTCATGTGTTGTGCAAAGGATTGGGGACTTGAGACCTTGTTGAAAGAGCTTGACTGTGTCAGGAGGATTTTCATGGGAAGTGAAGATCACAAAGGGAAGGAATTGCATTTTAAAACCGATGACTTGATATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCCTACAATTACATCATGCAATTTTTTAACTACGCGGAGAACATGACAAACTATCCGGCTCCTGGTTTTTCTTCAAAGGAATTGGTAGTCCATCAAGCCAACCTTCCAAAGGACACACTATCTCTTCCAAAAGCTAACTCTTCAATACCAAAATACCCTTATGACTCAAGCTACTCGAGGCCACATTCCAGTGCTTCGTCAAAAGATCTTCATCAAAAAGACCTCAAAGCTTCCATCTTAAGCGAGCTAAAAAACGACGCTGATCTTCAACTGGCAGCTTTACAAAGCAAAAGAAATTATTATGTTGTTTCTATCTGTTTGTTATGCAGGGAAAAAGGAAAGGAAGAGTTATGA 1602 0.3983 MFVTLCFSLIGCSSINHTIAPSLSYSYSHPFSHNPSCSLTRNSTENFEFSTSKDDHIWNCGEGTNGSVHSRFKPIGDGVVGLSNHGGGTGISLFMQQGNNSQYKTTSSENHSFFPSELPARPRFEAHSGDSRGNNSENLRVFEGLDGGKMRNISRLERIVWDIVSESVLIVSLTTQEFTGEVMASTQEYLKNLIENKKEELVSLQNWLEKRSDLTKDNLSKGNKVQLEILLAIKMGLSSFLYGNLQLSKMVEIFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHAVCGLQRKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLLKELDCVRRIFMGSEDHKGKELHFKTDDLILKLQTKIVSPSDAYNYIMQFFNYAENMTNYPAPGFSSKELVVHQANLPKDTLSLPKANSSIPKYPYDSSYSRPHSSASSKDLHQKDLKASILSELKNDADLQLAALQSKRNYYVVSICLLCREKGKEEL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02380 533 Pfam PHD - plant homeodomain finger protein 259 383 IPR032881 -
Vifa5g02380 533 CDD PHD_OBE1_like 289 348 IPR047578 -
Vifa5g02380 533 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 18 477 IPR004082 -
Vifa5g02380 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 174 196 IPR004082 -
Vifa5g02380 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 369 388 IPR004082 -
Vifa5g02380 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 296 316 IPR004082 -
Vifa5g02380 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 250 271 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02380 Vifa-Chr5 782695675 782697561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02380 259 411 PHD Gene Family AT5G57380 23.529 3.01e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02380 - - gmx:100820216 798.89