Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02379 ATGTTTGTTACACTTTGCTTTGCTCTCATTGGTTGCAGTAGTATAAACCATACTATAGCACCTTCTTTGTCTTACTCTTATTCGCATCCATTTTCGCACAATCCAAGTTGCTCTCTAACGCGGAATTCCACTGAGAATTTTGAGTTTTCGACGAGCAAAGATGATCATATTTGGAACTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGTGATGGTGTTGTTGGTTTGTCGAATCATGGAGGTGGAACCGGTATCAGTTTGTTCATGCAACAAGGGAATAATAGTCAGTATAAAACTACTAGTTCGGAAAATCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGGCCTAGATTTGAAGCTCATTCGGGGGATTCAAGAGGAAATAACTCAGAGAATCTGAGAGTGTTTGAAGGTTTAGATGGTGGTAAGATGAGGAATATTTTAAGACCAGAGAGAATTGTTTGGGATATTGTTTCAGAATCTGTCCTTATTGTTTCACTGACAACTCAGGAGTTTACCGGTGAAGTAATGGCATCAACTCAGGAATACTTGAAGAATCTGATTGAGAACAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGGCTTGAGAAAAGGTCTGATCTTACCAAGGATAATCTTTCAAAGGGCAATAAAGTTCAATTAGAGATTTTACTTGCCATCAAGATGGGGCTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGATTTTCTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATCTGCTCGGGAAATAAAGGGTTCTGTAGCTCTTGTATGTGTCCTGTTTGTTTGAACTTCGATTGTGCAAGTAACACTTGTAGCTGGATTGGATGCGATGTTTGTTCACACTGGTGCCATGCTGTATGTGGCCTCCAAAGGAAGCTTATCAAACCAGGGCCAAGCTTGAAGGGGCCTTCTGGGACCTCGGAAATGCAGTTTCATTGTATTGGATGCGGACATGCCTCAGAAATGTTTGGATTCGTCAAAGACGTCTTCATGTGTTGTGCAAAGGATTGGGGACTTGAGACCTTGTTGAAAGAGCTTGACTGTGTCAGGAGGATTTTCATGGGAAGTGACGATCACAAAGGGAAGGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCCTACAATTACATCATGCAATTTTTCAACTACGCGGAGAACATGACAAACTATCCGGCTCCTGGTTTTTCTTCAAAGGAATTGGTAGTCCATCAAGCCAACCTTCCAAAGGACACAATATCTCTTCCAAAAGCTAACTCTTCAATACCAAAATACCCTTATGACTCAAGCTACTCGAGGCCACATTCCAGTGCTTCGTCAAAAGATCTTCATCAAAAAGACCTCAAAGCTTCCATCTTAAGCGAGCTAAAAAACGACGCTGATCTTCAACTGGCAGCTTTACAAAGCAAAAGAAATTATTATGTTGTTTCTATCTGTTTGTTGTGCAGGGAAAAAGGAAAGGAAGAGTTATGA 1602 0.402 MFVTLCFALIGCSSINHTIAPSLSYSYSHPFSHNPSCSLTRNSTENFEFSTSKDDHIWNCGEGTNGSVHSRFKPIGDGVVGLSNHGGGTGISLFMQQGNNSQYKTTSSENHSFFPSELPARPRFEAHSGDSRGNNSENLRVFEGLDGGKMRNILRPERIVWDIVSESVLIVSLTTQEFTGEVMASTQEYLKNLIENKKEELVSLQNRLEKRSDLTKDNLSKGNKVQLEILLAIKMGLSSFLYGNLQLSEMVEIFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHAVCGLQRKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLLKELDCVRRIFMGSDDHKGKELHFKTDDLLLKLQTKIVSPSDAYNYIMQFFNYAENMTNYPAPGFSSKELVVHQANLPKDTISLPKANSSIPKYPYDSSYSRPHSSASSKDLHQKDLKASILSELKNDADLQLAALQSKRNYYVVSICLLCREKGKEEL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02379 533 Coils Coil 187 214 - -
Vifa5g02379 533 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 18 479 IPR004082 -
Vifa5g02379 533 Pfam PHD - plant homeodomain finger protein 259 383 IPR032881 -
Vifa5g02379 533 CDD PHD_OBE1_like 289 348 IPR047578 -
Vifa5g02379 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 174 196 IPR004082 -
Vifa5g02379 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 369 388 IPR004082 -
Vifa5g02379 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 296 316 IPR004082 -
Vifa5g02379 533 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 250 271 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02379 Vifa-Chr5 782683421 782685310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02379 259 392 PHD Gene Family AT5G57380 23.881 3.98e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02379 - - gmx:100820216 800.431