Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02375 ATGTGCTGTGAGTTGGAGCGGTTAAAGCCAGCGCCGTATCCTTCTCTATCTCCAGTTTCGACACGCAATTCTCGACCAGGAAACAACGCCATGAATCACTTAACTGTTGGCACGGAAGATTCTTTTGCGAGTTTACTTGAGCTTGCTGCTAATAACGATGTGGAAGGGTTCAAGCGGTTGATTGAGTTTGATCCTACGTCGGTGGATGAGATTGGATTATGGTATGGTCGTCGGAAGGGATCGAAGCAGATGGTGAATGAGCGAAGGACTCCTTTGATGGTTGCTGCTACCTACGGTAACATTGATGTTATGAAACTGATTATTTCTCTATCTGATGTTGACATCAATAGGCCTTGTGGCCTTGACAAGAGCACTGCTCTTCACTGTGCTGCATCGGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAGCTGCTTCTTGCAGCAGGGGCTGATCCCAATTCTGTGGATGCTAACGGGGATCGTCCGAAAGATGTTATTGTTTATCCCCCTAAGCTTGAGTTTGTGAAAATCAGTCTTGAAGAGCTTCTTCAAACTGATGATCCTAGTGTTGGCTGTAATCTTAGGGTGATTACGAATTCCTTTAATACATATTCTCCTCCTTTGTCGGCTTCTCCTGAGAACGGGTCTCCTTCACCGCCGCCGGATCTTCTGTTGAGGTTAAAGTCAATTGATGTCCCTATTTCTCCTGCTGGATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCCGATATCAAAAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTGCGACCTTGTTCGCGCGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAAAATGCACGGAGAAGGGACCCGAGAAAGTATCACTACAGCTGTGTTCCCTGTCCTGATTTTCGCAAGGGTGCTTGCAGGCGAGGGGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCTGCACAGTATAGAACCCGTCTCTGCAAGGACGGGATTAACTGCTCCAGGAGGGTTTGCTTCTTTGCCCACACCGCTGAAGAGCTTCGACCATTGTATGTTTCAACCGGTTCTGCTGTTCCCTCGCCTCGATCAAGCACATCTTCTGCAATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCACCTTCTTCAATGTCTGTTATGTCTCCTTCACCATTCACTCCACCCATGTCACCTTCCGGCAATGGCATTTCACACAACTCTGGTGCTTGGCCCCAGCCAAACATCCCTGCATTGCATCTTCCGGGAAGTAATCTCCAGTCCAGTCGGTTGAGATCTTCACTCAATGCTAGAGATATTCATATGGATGAATTTGACATGTTATCTGATTATGATCAACAGCAACAGCTTATCAACGAGTTGGCATGCCTCTCTCCACACCATTTGAATTCTAACAGTCTTAGCCGCTCTGGTCGAATGAAGCCATTAAATCCATCAAATCTTGACGACCTCTTTTCTGCGGAGAGTTCTTCTCCTCGATATGCCGATCCAACACTGAATTCAACTGTTTTTTCCCCTACTCACAAATCAGCTTTCTTTAACCAGTTTCAGCAGCAGCAAAACATGTTGTCACCAGTGAATACAAATTTTTCTCCCAAAAATGTTGACCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCATCTGGAAGAATGTCTCCACGGAATGTGGAACCTATCTCCCCAATGAGCTCAAGGATGTCCATGCTGGCACAACGCGACAAACAGCAACAGTTTCGCAGCCTAAGCTTCCGCGAGCACGGCTCTAACTCTATGCTTGCACCTCCCGGCTCAGTCAATTCTTGGTCCAAATGGGAATCTCCCAATGGTAAGCTAGATTGGGCTCACAATGCAGATGAAGTAGGCAAGCTCCGTAGATCATCTTCTTTTGAGCTCGGGAATAACGGCGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTCAAAGAATCTCCAACCGAGATCAAAGAGAAATTGGCAACATCTATCCCAAACGTTGCGCCCGCTGGAACGTCCGGTGAGGGATTGAATATGAATATGAACGCACAAATGGACTCTGCTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGACCATCTCGTGGCTCAGCAAAACTGA 2202 0.4682 MCCELERLKPAPYPSLSPVSTRNSRPGNNAMNHLTVGTEDSFASLLELAANNDVEGFKRLIEFDPTSVDEIGLWYGRRKGSKQMVNERRTPLMVAATYGNIDVMKLIISLSDVDINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSVDANGDRPKDVIVYPPKLEFVKISLEELLQTDDPSVGCNLRVITNSFNTYSPPLSASPENGSPSPPPDLLLRLKSIDVPISPAGSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSGAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDEFDMLSDYDQQQQLINELACLSPHHLNSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPTLNSTVFSPTHKSAFFNQFQQQQNMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMSSRMSMLAQRDKQQQFRSLSFREHGSNSMLAPPGSVNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATSIPNVAPAGTSGEGLNMNMNAQMDSADHAVLGTWLEQMQLDHLVAQQN 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02375 733 PANTHER UNKEMPT FAMILY MEMBER 47 675 IPR045234 -
Vifa5g02375 733 SMART ANK_2a 40 70 IPR002110 GO:0005515
Vifa5g02375 733 SMART ANK_2a 122 154 IPR002110 GO:0005515
Vifa5g02375 733 SMART ANK_2a 87 117 IPR002110 GO:0005515
Vifa5g02375 733 Gene3D - 39 171 IPR036770 -
Vifa5g02375 733 Pfam Ankyrin repeats (3 copies) 48 156 IPR002110 GO:0005515
Vifa5g02375 733 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 327 IPR000571 GO:0046872
Vifa5g02375 733 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Vifa5g02375 733 ProSiteProfiles Zinc finger C3H1-type profile. 307 329 IPR000571 GO:0046872
Vifa5g02375 733 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Vifa5g02375 733 SUPERFAMILY Ankyrin repeat 45 175 IPR036770 -
Vifa5g02375 733 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Vifa5g02375 733 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Vifa5g02375 733 SMART c3hfinal6 302 328 IPR000571 GO:0046872
Vifa5g02375 733 SMART c3hfinal6 337 360 IPR000571 GO:0046872
Vifa5g02375 733 FunFam Zinc finger CCCH domain-containing protein 66 260 328 - -
Vifa5g02375 733 Gene3D - 303 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02375 Vifa-Chr5 781777476 781779677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02375 39 726 C2H2 Transcription Factor Family AT5G12850 53.032 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa5g02375 Ank_2 3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02375 - - ccaj:109796653 1142.49