Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02373 ATGCTTCAACTTGTGTATCTCCTTAGATTAGCATTGTTGCTTTGTGTTTCATTTGGCTTCTTGTTACATCCTGTTGTAACATCTGTGATGCCATTAGGTTCCAAACTATCTGTTGTTGATAATAATTATTGGGTTTCCACCAATGGCGATTTTGCATTCGGGTTCTTTAACGTTACTGATGAACCTAACCAGTTTAGTGTCGGCATTCGTTTCAATTCAAAGTCTATTCCTTATAGCCAACAAACTCTTGTTTGGGTTGCTGGTGGTCATGTCAAAGTAAGCAACATGTCGTATTTTCAACTTACTTCACAAGGGGAGCTTGTCTTGGTTGATTCCTTACATGGAGTCACTGCGTGGACTAGTGGAACGGGAAACAGATCTGTTGTTTCGGTGGCTCTTCACGACGATGGAAATCTTGTTCTTGTAGACGCAAAACAAACCATTATTTGGCAAAGTTTTGATAATCCTTCTGATACACTACTCCCAGGACAGAGATTACATGTATCCAAGACACTTCGTGCTTCATCCAAGAACCTAGAGACTAGTTACTATAGTCTTTATTTGAATGCTTCTGGTCGGTTGCAGCTTCGCTGGGAAAGTAATATTGTATACTGGACAAGTGAAAGCCATTCTTCTACTGAAAATCTCACTGCGACCATCACATCCGATGGATCTCTTCAACTTCAAGACCAACATTCAAGAGCTATTTGGAGTGTGTTTGGAGAAGACCACAACGATTCTGCTAACTATCGATTTCTTAGGCTAGATTTTGATGGCAATCTCCGGTTATATTCTTGGATGGAAGATTCGCAGTCATGGAGATCTGTTTGGCAAGCTGTCGAGAATCAATGCAAGGTCTTTGCTACTTGTGGCGAACGTGGTGTCTGTGTCTTCAATGCTTCAGGTTCGGCTGAGTGCAGGTGCCCTTTCAAGACAATTGAAACTAACAAATGTTTGGTTTCGAATAAACAGGATTGTGGTTCTCTTACCGAAATGAAAATGTACAAGAACTTGTATCTATATGGAATTTATCCTCTTGACGATTTGATTGTCACAAGTAGTTTGCAGCAATGTGTACAGTTGTGCCAGAATGACTCCGAGTGTACAGTTGCAACCTTTTCGAACATCGGTAGTCCACAATGTTCCATAAGGAAAACAAAATACATAACTGGCTATCAAGTTCCATCTCTAACCTCAATATCATTTGTTAGGAGTTGCTCAGATCCAGTTGGTGTAAATCTCAGTTTCACTATGTCACCTCCATCAGAACCGTCTCCTCACAGGCTTTGTGTTCCTTGCTTGGTAGGAGCAGCCTCAGGAACATTTGTCATTGTTGGTTTTGTCCAGCTGGGAATTGTTTTCTTCATATGTAGACGGAAAAATTCTACTATGAGAAGAGTCACACTAGCATTCACATTCCCGAATTCGAAAGGTTTGATGGTGTTATCCTTTGCAGAAATCAAGAGCATCACCGGTGATCTCAAGAATCAAGTTGGGCCAAATATGTTCAAGGGTGTGCTACCGAGCAATCGTGTAATTGTAATCAAAGACCTGAATGCATCCATAGAAGAACGGAAGTTCCGGAGCGCTGTTCTGAAGTTAGGGAACATCCACCACAAGAACCTAATGAAGCTGGAGGGTTACTGTTGTGAACTCAATCATCGATATTTGGTCTACGAATATGCCAAAAATGGTTCGTTGGACAAGTATTTAGACGATTCTACTCTTTGCAAGAAGCTTACTTGGAGAACAAGAGTTGAAATATGCTCATCTGTTGGGAAAGCAATCTGTTATTTGCATTCGGGGTGTAGGGAGTTTATAAGCCACGGAAACTTGAAATGCGAAAACATAATGTTAGACGAAAACTCAGTTGCTAAGGTGTCTGATTACGGATTCACAATAGTTGACGGCGAGGCTACATGCTGCGGCTTTTCAGCAGAAAAAGACGTAGCAGATTTCGGAAAACTAGTCTTAACCCTGTTAACCGGTTGTCGCGATCACGATCACGATCACGGACAAGTCTATGAATGGGTTTACAAAGAATGGCTGGAAGGAAGAGTAAATAACGTGGTCGATAAAAGAATCGACGATGGTGCTAATTCGGAGGAACTCGAACGTGCATTAAGAATCGCGTTCTGGTGCATTCAAACCGATGAACAGAAAAGACCTCCGATGGAAGAGGTAGTGAGAGTACTAGATGGTACATTGAATGTTGATCCACCACCACCTCCATTTGATTTGGGATTTGATCCACAAGAGAATGGTTCAGAATCAGAAATAGAATCAGTGGTTTAG 2295 0.4148 MLQLVYLLRLALLLCVSFGFLLHPVVTSVMPLGSKLSVVDNNYWVSTNGDFAFGFFNVTDEPNQFSVGIRFNSKSIPYSQQTLVWVAGGHVKVSNMSYFQLTSQGELVLVDSLHGVTAWTSGTGNRSVVSVALHDDGNLVLVDAKQTIIWQSFDNPSDTLLPGQRLHVSKTLRASSKNLETSYYSLYLNASGRLQLRWESNIVYWTSESHSSTENLTATITSDGSLQLQDQHSRAIWSVFGEDHNDSANYRFLRLDFDGNLRLYSWMEDSQSWRSVWQAVENQCKVFATCGERGVCVFNASGSAECRCPFKTIETNKCLVSNKQDCGSLTEMKMYKNLYLYGIYPLDDLIVTSSLQQCVQLCQNDSECTVATFSNIGSPQCSIRKTKYITGYQVPSLTSISFVRSCSDPVGVNLSFTMSPPSEPSPHRLCVPCLVGAASGTFVIVGFVQLGIVFFICRRKNSTMRRVTLAFTFPNSKGLMVLSFAEIKSITGDLKNQVGPNMFKGVLPSNRVIVIKDLNASIEERKFRSAVLKLGNIHHKNLMKLEGYCCELNHRYLVYEYAKNGSLDKYLDDSTLCKKLTWRTRVEICSSVGKAICYLHSGCREFISHGNLKCENIMLDENSVAKVSDYGFTIVDGEATCCGFSAEKDVADFGKLVLTLLTGCRDHDHDHGQVYEWVYKEWLEGRVNNVVDKRIDDGANSEELERALRIAFWCIQTDEQKRPPMEEVVRVLDGTLNVDPPPPPFDLGFDPQENGSESEIESVV 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02373 764 SUPERFAMILY Protein kinase-like (PK-like) 503 732 IPR011009 -
Vifa5g02373 764 ProSiteProfiles Bulb-type lectin domain profile. 29 154 IPR001480 -
Vifa5g02373 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 155 - -
Vifa5g02373 764 PANTHER OS07G0415500 PROTEIN 12 744 - -
Vifa5g02373 764 ProSiteProfiles Bulb-type lectin domain profile. 157 276 IPR001480 -
Vifa5g02373 764 ProSiteProfiles PAN/Apple domain profile. 326 406 IPR003609 -
Vifa5g02373 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 458 561 - -
Vifa5g02373 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 641 740 - -
Vifa5g02373 764 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 207 IPR036426 -
Vifa5g02373 764 SUPERFAMILY alpha-D-mannose-specific plant lectins 174 275 IPR036426 -
Vifa5g02373 764 SMART ntp_6 327 405 IPR003609 -
Vifa5g02373 764 ProSiteProfiles Protein kinase domain profile. 473 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02373 764 Pfam Protein tyrosine and serine/threonine kinase 512 633 IPR001245 GO:0004672|GO:0006468
Vifa5g02373 764 MobiDBLite consensus disorder prediction 739 764 - -
Vifa5g02373 764 Gene3D Transferase(Phosphotransferase) domain 1 639 740 - -
Vifa5g02373 764 Gene3D Transferase(Phosphotransferase) domain 1 562 638 - -
Vifa5g02373 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 562 640 - -
Vifa5g02373 764 Gene3D - 26 154 IPR036426 -
Vifa5g02373 764 PIRSF SRK 1 638 IPR024171 GO:0004674
Vifa5g02373 764 PIRSF SRK 639 763 IPR024171 GO:0004674
Vifa5g02373 764 CDD B_lectin 36 156 IPR001480 -
Vifa5g02373 764 Gene3D - 155 275 IPR036426 -
Vifa5g02373 764 Pfam D-mannose binding lectin 82 173 IPR001480 -
Vifa5g02373 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 156 275 - -
Vifa5g02373 764 Pfam S-locus glycoprotein domain 205 308 IPR000858 GO:0048544
Vifa5g02373 764 Gene3D Phosphorylase Kinase; domain 1 457 561 - -
Vifa5g02373 764 SMART blect_4 35 156 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02373 Vifa-Chr5 779833431 779835725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02373 424 739 Receptor kinase-like Gene Family AT1G56120 32.378 1.33e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa5g02373 PK_Tyr_Ser-Thr 1.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02373 - - gmx:100809478 1138.25