Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02361 ATGGGAAATTGCTGTGCTACCCCTGCAGTAACAGGCGAAGACACAACCAACAAAAAAACCAAAAAGCCCAAAAAGGAGAATCCCTTCGCAATCGATTACGGCTTCAACAACAAAACCTCGAGCTCAAAACTCACCGTTTTGAAGGATCCAACCGGCCGGGAAATCGAAGTCCGTTACGAGCTCGGTCGCGAGCTCGGTCGAGGTGAATTCGGGGTAACGTATCTTTGCACAGACAAAGAAACCGGAGAGGAGCTAGCGTGTAAGTCGATCTCGAAGAAGAAGCTTAGAACTGCTATTGATATCGAAGATGTTAGGAGAGAAGTTGAAATCATGAAGCATATGCCAAAGCATGGTAATATTGTTACGTTGAAGGATACTTATGAGGATGATAATGCTGTGCATCTTGTTATGGAGCTTTGTGAAGGTGGAGAGCTTTTTGATCGGATTGTTGCCCGGGGGCATTATACTGAACGCGCCGCCGCGGCGGTTACGAAAACTATTGTTGAAGTTGTTCAGATGTGCCATAAACATGGTGTGATGCATAGAGATCTCAAGCCGGAGAACTTTTTGTTTGCGAATAAGAAGGAAACAGCAGCTTTGAAAGCTATAGATTTTGGTTTGTCGGTGTTTTTTAAACCAGGTGAAAAATTTAATGAGATAGTTGGAAGTCCATATTATATGGCTCCTGAGGTGTTGAAGAGAAATTATGGCCCAGAAGTAGATATCTGGAGTGCTGGAGTTATTTTATACATCTTACTTTGTGGTGTTCCTCCATTTTGGGCAGAAACTGAGCAAGGGGTTGCACAAGCAATTATACGATCTGTTGTTGATTTCAAAAGGGACCCATGGCCAAAAGTTTCGGATAATGCAAAAGATCTTGTGAAGAAGATGCTAAATCCTGACCCAAAGCGGCGACTTACTGCACAAGAAGTGTTAGATCATCCATGGTTAATAAATGCAAAGAAAGCACCCAACGTTTCATTAGGAGAAACAGTTAGAGCAAGGCTAAAGCAGTTTTCCGTAATGAACAAGCTCAAGAAAAGAGCTTTGAGGGTTATTGCCGAGCATTTGTCGGTAGAAGAAGCAGCGGGACTAAAAGAGGGATTCAAGCTTATGGATACAAGTAACAAAGGAAAGATCAACTTCGATGAGCTACGGGTAGGCTTGCACAAACTAGGCCATCAAATTCCAGACGCTGATGTCCAAATTCTTATGGAAGCTGGTGATGTTGACAGAGACGGGTACCTAGATTACGGGGAGTATGTTGCCATTTCAGTTCATTTGAGAAAGATGGGAAATGATGAACATCTTCACAAAGCCTTTGAATTCTTTGATCAAAACCAAACTGGGTATATTGAGATTGAGGAGCTTCGCAATGCATTATCCGATGAAATTGAAGAAACAAACAGTGAAGAGGTCATTAGTGCAATTATGCATGACGTGGACACGGATAAGGACGGAAAGATAAGTTATGAAGAATTTGCAAACATGATGAAGGCCGGAACAGATTGGAGAAAGGCATCAAGGCAGTATTCGCGAGAGAGGTTTAACAGTCTGAGCCTGAAATTGATGAAGGATGGGTCATTACAATTAAACAACGAAAAACAATGA 1611 0.4233 MGNCCATPAVTGEDTTNKKTKKPKKENPFAIDYGFNNKTSSSKLTVLKDPTGREIEVRYELGRELGRGEFGVTYLCTDKETGEELACKSISKKKLRTAIDIEDVRREVEIMKHMPKHGNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLNPDPKRRLTAQEVLDHPWLINAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEAAGLKEGFKLMDTSNKGKINFDELRVGLHKLGHQIPDADVQILMEAGDVDRDGYLDYGEYVAISVHLRKMGNDEHLHKAFEFFDQNQTGYIEIEELRNALSDEIEETNSEEVISAIMHDVDTDKDGKISYEEFANMMKAGTDWRKASRQYSRERFNSLSLKLMKDGSLQLNNEKQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02361 536 SMART efh_1 473 501 IPR002048 GO:0005509
Vifa5g02361 536 SMART efh_1 400 428 IPR002048 GO:0005509
Vifa5g02361 536 SMART efh_1 364 392 IPR002048 GO:0005509
Vifa5g02361 536 SMART efh_1 436 464 IPR002048 GO:0005509
Vifa5g02361 536 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Vifa5g02361 536 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Vifa5g02361 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vifa5g02361 536 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Vifa5g02361 536 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Vifa5g02361 536 Pfam EF-hand domain pair 435 499 IPR002048 GO:0005509
Vifa5g02361 536 CDD STKc_CAMK 58 316 - -
Vifa5g02361 536 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Vifa5g02361 536 Coils Coil 451 471 - -
Vifa5g02361 536 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Vifa5g02361 536 SUPERFAMILY Protein kinase-like (PK-like) 58 324 IPR011009 -
Vifa5g02361 536 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Vifa5g02361 536 Gene3D Phosphorylase Kinase; domain 1 61 144 - -
Vifa5g02361 536 CDD EFh 436 499 IPR002048 GO:0005509
Vifa5g02361 536 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02361 536 FunFam calcium-dependent protein kinase 13 145 325 - -
Vifa5g02361 536 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Vifa5g02361 536 SUPERFAMILY EF-hand 346 525 IPR011992 -
Vifa5g02361 536 Gene3D - 326 501 - -
Vifa5g02361 536 FunFam Calcium-dependent protein kinase 7 326 502 - -
Vifa5g02361 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 494 - -
Vifa5g02361 536 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02361 536 Pfam Protein kinase domain 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02361 536 FunFam Calcium-dependent protein kinase 1 61 144 - -
Vifa5g02361 536 MobiDBLite consensus disorder prediction 1 25 - -
Vifa5g02361 536 Pfam EF-hand domain pair 377 425 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02361 Vifa-Chr5 776869698 776872851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02361 1 534 EF-hand Containing Proteins AT5G19450 79.664 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa5g02361 Pkinase 3.1e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02361 K13412 - gmx:100790745 948.347