LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g02356	ATGGAAGCAGTAGCAGCAGCCATTGTTGAAAACAACAACAGTTATGATTCTTTCTGCTTCACAAATGCTAAAAATAATAACATGAAAGTAAACAGCACCGATCCTTTGAACTGGGGCGCGGCAGCGGAGGCAATGAAAGGGAGTCACTTGGATGAAGTGAAGCGTATGGTCGAAGAGTATCGGAAACCTGTGGTACGTCTTGGTGGTGAGACACTGACGATTTCTCAGGTGGCTGCCATTGCCGCACACGACCATGGCGTGAAGGTGGAGTTGTCGGAATCTGCAAGAGCTGGTGTTAAGGCCAGCAGTGACTGGGTGATGGAGAGTATGAATAAAGGCACAGACAGTTACGGTGTCACCACTGGTTTCGGTGCAACCTCACATCGCCGCACCAAACAAGGCGGTGCTCTTCAGAAAGAACTCATCAGATTTTTGAATGCTGGAATATTTGGAAATAGAATTGAATCAAACCACACACTACCGCACACGGCAACAAGAGCTGCTATGTTAGTGCGAATCAACACACTTCTCCAAGGCTATTCAGGCATTAGATTTGAAATCTTAGAAGCCATAACCAAGCTCATTAACAACAACATTACTCCTTGTTTACCGCTTCGAGGTACAATCACAGCTTCAGGAGATTTAGTCCCTTTATCTTACATCGCTGGTTTACTAACCGGAAGACCGAATTCCAAAGCTCATGGACCGTCTGGTGAGATACTTAATGCAAAAGAAGCTTTTCAATTGGCTGGAATCAATGTTGATTTCTTTGAGTTACAACCAAAAGAAGGACTTGCACTTGTTAATGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTATTCTATTTGAAGCTAACATTCTGGCTGTGTTGTCTGAAGTGCTCTCAGCTATTTTTGCTGAAGTTATGCAAGGAAAACCTGAATTTACTGATCATTTGACTCACAAGTTAAAGCACCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACATATTTTGGATGCAAGTGCTTATGTTAAAGCAGCTAAGAAGTTGCATGAGATGGATCCTTTGCAGAAACCAAAACAAGATAGATACGCGCTAAGAACTTCACCGCAATGGCTTGGTCCTCTGATTGAAGTAATTAGATTCTCTACTAAGTCAATTGAGAGGGAGATTAATTCTGTTAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCTTTGCATGGTGGAAATTTTCAAGGAACACCTATTGGAGTATCCATGGATAATACACGTTTGGCTCTTGCATCGATTGGTAAACTCATGTTTGCTCAATTCTCCGAACTTGTTAACGATTTTTACAATAACGGGTTGCCTTCAAATCTTTCTGCTAGTAGAAATCCCAGCTTGGATTATGGTTTCAAAGGATCTGAAATTGCCATGGCTTCTTATTGTTCCGAGTTACAATATCTTGCAAATCCGGTCACAACTCATGTTCAAAGTGCTGAGCAACATAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGGAAAACATATGAAGCCATTGAGATTCTTCAACTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTAAGACATTTGGAGGAGAATTTGAAAAACTCAGTTAAGAATATTGTAAGCCAAGTTGCTAAAAGAACCCTTACAACTGGTGTCAATGGCGAACTCCATCCTTCAAGGTTTTGTGAAAAGGACTTATTAAGAGTGGTTGATAGGGAGCATGTGTTTGCCTATATTGATGATGCTTCTAGTGCTACATATCCATTGATGCAAAAACTAAGGCAAGTGCTAGTGGATCATGCATTGGTAAATGGAGAAAGTGAGAATAATGTGAACACTTCAATCTTTCAAAAGATTGCTACTTTTGAGGATGAGTTGAAGGCCCTATTGCCAAAAGAGGTTGAAAGTGCAAGATTTGCATATGAGAGTGGAAATCCAACAATTCCAAACAAGATCAATGGATGCAGATCTTATCCACTTTACAGATTTGTGAGACAAGTGTTGGGAACTAATTTGTTAACTGGAGAAAAGGTTACTTCACCAGGTGAAGAGTGTGACAAATTGTTCACAGCTATGTGTCAAGGCAAAATCATTGATCCTCTTCTTGAATGCTTGGGAGAGTGGAATGGTTCTCCTCTTCCAATTTGTTAA	2178	0.4063	MEAVAAAIVENNNSYDSFCFTNAKNNNMKVNSTDPLNWGAAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNRIESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKEAFQLAGINVDFFELQPKEGLALVNGTAVGSGLASIILFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDASAYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFAYIDDASSATYPLMQKLRQVLVDHALVNGESENNVNTSIFQKIATFEDELKALLPKEVESARFAYESGNPTIPNKINGCRSYPLYRFVRQVLGTNLLTGEKVTSPGEECDKLFTAMCQGKIIDPLLECLGEWNGSPLPIC	725

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g02356	725	Gene3D	-	538	659	IPR023144	-
	Vifa5g02356	725	SUPERFAMILY	L-aspartase-like	34	725	IPR008948	GO:0003824
	Vifa5g02356	725	Pfam	Aromatic amino acid lyase	72	550	IPR001106	-
	Vifa5g02356	725	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	207	223	IPR022313	GO:0016841
	Vifa5g02356	725	NCBIfam	phenylalanine ammonia-lyase	34	714	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
	Vifa5g02356	725	FunFam	Phenylalanine ammonia-lyase	272	584	-	-
	Vifa5g02356	725	Gene3D	-	24	271	IPR024083	-
	Vifa5g02356	725	FunFam	Phenylalanine ammonia-lyase	538	659	-	-
	Vifa5g02356	725	FunFam	Phenylalanine ammonia-lyase	25	271	-	-
	Vifa5g02356	725	PANTHER	HISTIDINE AMMONIA-LYASE	30	725	IPR001106	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g02356	Vifa-Chr5	772557389	772559656	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g02356	18	725	Monolignol Biosynthesis Gene Families	AT2G37040	82.203	0.0	1243

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g02356	K10775		-	gmx:100803857	1264.6

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