Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02353 ATGGGGACTCCCGAATTCCCAGATCTAGGCAAGCATTGTACAGTTTCCGATTGCAGACTCAACGATTTCTTACCCTTCACTTGCGATCGCTGCAATCAGGTATATTGTTTGGAGCACAGAAGTTATATAAAACATCATTGTACAAAACCCAACAAACAAGATGTGACGGTTGTTATATGTCCACTTTGTGCCAAAAGTGTTCGATTAATTCCAGACAAAGATCCAAACATATTATGGGAACATCATGTCAACACAGATTGTGATCCATCAAATTACGAAAAAGTCACAAAAAAGAAAAAGTGCCCTACCCAAGGATGCAGAGAGACACTAGTTTTCTCCAACACAATCAAGTGTAGAGACTGCGGGATAGAACATTGTTTGAAACACAGGTTTGGACCTGATCATAAATGTCCAGGACCCGAAAAAATGGAAACTAGTTTTTCATTCATGAGTCTTTTGAATTTGAGTAGTGCTAGTAGTAGTAAAGAAGAATCAAAAACAAATTCATCTTCGTCATCATCATCGACTTCGTCTAAATGGGCTTCAAGCCTTCTTGAGTTGGCTGCTAAATTGAGTGGAAAAACTCAAGAGGAGAAATGTCCACTTTGTGATGCGAAGTTTTCATCGGTTACTAGTTTGGTCGATCATGCAAAAAGAGTTCATGAAGGAAGTAGTATCAAGCGAAATGGGGCGAAGAAGGTGTCGATTTCTGCATGTCCGAAGTGTAGTAAAGGTTTTCTTGATCCGAATTCTCTTGTGGAGCATGTTGAAAGAGATCATGGTGGTAGTTCTTGA 795 0.3962 MGTPEFPDLGKHCTVSDCRLNDFLPFTCDRCNQVYCLEHRSYIKHHCTKPNKQDVTVVICPLCAKSVRLIPDKDPNILWEHHVNTDCDPSNYEKVTKKKKCPTQGCRETLVFSNTIKCRDCGIEHCLKHRFGPDHKCPGPEKMETSFSFMSLLNLSSASSSKEESKTNSSSSSSSTSSKWASSLLELAAKLSGKTQEEKCPLCDAKFSSVTSLVDHAKRVHEGSSIKRNGAKKVSISACPKCSKGFLDPNSLVEHVERDHGGSS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02353 264 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Vifa5g02353 264 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Vifa5g02353 264 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Vifa5g02353 264 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vifa5g02353 264 ProSitePatterns Zinc finger C2H2 type domain signature. 239 260 IPR013087 -
Vifa5g02353 264 Gene3D - 81 150 IPR035896 -
Vifa5g02353 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Vifa5g02353 264 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vifa5g02353 264 SMART c2h2final6 198 221 IPR013087 -
Vifa5g02353 264 SMART c2h2final6 237 260 IPR013087 -
Vifa5g02353 264 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Vifa5g02353 264 Gene3D Classic Zinc Finger 156 264 - -
Vifa5g02353 264 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Vifa5g02353 264 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 223 - -
Vifa5g02353 264 Gene3D - 2 59 IPR035896 -
Vifa5g02353 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 226 IPR013087 -
Vifa5g02353 264 ProSitePatterns Zinc finger C2H2 type domain signature. 200 221 IPR013087 -
Vifa5g02353 264 Pfam C2H2-type zinc finger 199 221 - -
Vifa5g02353 264 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02353 Vifa-Chr5 771230157 771231057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02353 1 264 C2H2 Transcription Factor Family AT2G41835 55.245 3.44e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g02353 zf-AN1 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02353 - - gmx:100786272 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02353 5 771230157 771231057 Vifa5g02353 5 771230157 771231057 ECH