Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02352 ATGGTTGATGTTCTAAGCCCTTTCACAATCACATCGCCTCCTCCACCATCTCCTTTATCAAACCAAGACAACACCATACCCATGTTATACTATAGTCTTGTAGTGATGGGAGTTGCAGCTATAGTTTTAGCAATTTACAACATCATCATCATCAAACGTCGCAATAGGAACCACAATAATCAAGCACAATCCACAAGAGAAAATCTTAGTAATACGAGGTTTGAAAACCAACAAAGAAACTTGCTTTCAAGCTTCAAGTATAGGAAGGAAGTGGTTACAAAAGAAGAAGGAGAAAAGGGTTATGATGAATATGAATGTTCGGTTTGTTTATCGGTTTATGAAGAAGGAGAAGATGTTAGGAAGCTACCAAGGTGTAAACATAGTTTTCATGCGATTTGTATAGATATGTGGCTTTATTCTCATTTTGATTGTCCAATTTGTAGAACACCTGTTGGCTCTTTTTGTGATGGGATGAATGAATCTGGTGGTAGCATCTCTGTTTGA 504 0.373 MVDVLSPFTITSPPPPSPLSNQDNTIPMLYYSLVVMGVAAIVLAIYNIIIIKRRNRNHNNQAQSTRENLSNTRFENQQRNLLSSFKYRKEVVTKEEGEKGYDEYECSVCLSVYEEGEDVRKLPRCKHSFHAICIDMWLYSHFDCPICRTPVGSFCDGMNESGGSISV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02352 167 Pfam Ring finger domain 105 148 IPR001841 -
Vifa5g02352 167 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vifa5g02352 167 SMART ring_2 106 147 IPR001841 -
Vifa5g02352 167 FunFam RING-H2 finger protein ATL1 59 153 - -
Vifa5g02352 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 154 IPR013083 -
Vifa5g02352 167 CDD RING-H2_EL5-like 105 148 - -
Vifa5g02352 167 SUPERFAMILY RING/U-box 84 154 - -
Vifa5g02352 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 151 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02352 Vifa-Chr5 770819220 770819723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02352 91 151 C3H Transcription Factor Family AT5G10380 55.738 4.69e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02352 - - aprc:113852327 192.586