Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02345 ATGGAAATTCTGTGCTTGTTGTATATTGTGTTGGGTTTGTATGTTTCAGTTGGTGAATTTGTTGGTGCTGAGTTACAAGACCAAGCTATAATACAAGCCATCAATCAGGAGCTAAGAGTTCCTGAATGGAGTGATGCAAACATTTCAGATTACTGTACATGGCAAGGGGTTTTATGTGGCAATCATTCAATGGTAGAGAAGCTTGATCTTTCTCACAGAAGTCTTAGAGGTAATGTGAGTTTAATCTCTGAGCTCAAAAGTTTGAAGTTGCTTGATCTTTCTAATAATAACTTTGGTGGATTGATTCCTCTTGCTTTTGGAGATTTGTCTGAGCTTGAAGTTCTAGATTTGTCTTCTAATAAGTTTGAAGGTTCCATTCCGTCACAGTTTGGTGATCTCAGAAGCTTAAAGTCATTGAACATTTCTAATAATTTGCTTGTTGGTGAGTTACCAATGGAACTTCATGGTTTAAAGAAATTGCAGGATTTGCAACTTTCTAGTAATCAGTTGAGTGGTTTTATACCTTCTTGGGTGGGGAATTTAACCAATTTGAGAGTTTTTTCGGCGTATGAGAATCGTTTAGATGGTAGGATTCCAGATAATCTAGGCTTGATTCCTGAACTTCAGATACTTAACTTGCATTCTAACCAGCTTGAAGGTCCGATACCAGCAAGCATTTTCGCTTCGGGGAAGCTTGAAGTTCTAGTTCTTACTCAGAATAATTTTAGTGGTGATCTTCCGGAGGAAATCGGGAACTGTCGTGGCCTTTCGAGCATTAGAATTGGAAACAACCATCTTGTAGGTACTATTCCTAAGACCATTGGAAATCTTAGTAGCCTGACATATTTCGAAGCCGATAATAATAATCTTTCTGGTGAGCTAGTGTCGGAGTTTGCGCGATGTTCTAATCTCACCCTTTTGAATTTAGCTTCAAATGGATTTTCTGGGATGATTCCACAAGAGTTTGGACAACTTATGGATCTTCAGGAATTGATTTTGTCTGGAAATGGCCTATTTGGTGATATTCCAAAACCAATTCTCAGTTGTAAAAGCCTCAACAAGCTTGATATCAGCAACAACAAATTCAATGGGACGATACCGAATGAAATATGCAATATTTCTCGGTTGCAGTACTTGTTATTGAATCTGAATTCCATAAGAGGAGAGATCCCTCATGAGATAGGAAGTTGTGCAAAACTCCTTGAATTACAGTTGGGAAGTAATTATTTGACTGGAACTATTCCTCCCGAGATCGGTCGCATCAGGAACTTACAGATAGCTTTGAATTTGAGTTTCAACCATCTCCATGGACCACTGCCACCTGAATTAGGAAAACTGGACAAACTTGTTTCTCTCGATGTTTCAAATAATCGGCTATCAGGCAATATCCCAACCGAGCTTAAGGGAATGTTGAGCTTGATAGAGGTGAATTTCTCGAATAATCTATTTGGAGGCCCTGTACCAACATTTGTACCGTTCCAGAAGAGTCCTACTTCGAGTTTTTTAGGAAATAAAGGGCTTTGTGGAGATCCATTGAACTCTTCGTGTGGAAATATTTATGATGTTCACGGTAGTTACCATCACAAGGTTTCTTACAGAATCGTATTGGCAGTAATTGGTTCTGGTTTGGCAGTTTTTACGTCGGTTACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGCAGCTAAAGAAGCTGCAGGTATTGTTGATGATCCAACTGATGACAAACCAACTATCGTAGCAGGGACGGTTTTTGTCGATAATCTACAGCAAGCGATAGACCTCGACGCTGTTGTTAACGCAACGCTGAAAGACTCGAATAAACTCAGCAGTGGAACTTTCAGCTCAGTTTACAAAGCAACCATGCCTTCTGGTGTGGTTTTGTCTGTCAGGAGACTGAAATCCGTGGACAAGACGATAATCCACCATCAAAACAAGATGATTCGAGAACTCGAAAGGCTAAGCAAGCTTCTTCATGAATCTACCAAGCAACCTGAATATCAGCCCGATTGGCCAACTAGGCTATCCATCGCCATCGGTGTCGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATAATCCATCTTGACATTTCTTCTGGCAATGTTCTTCTGGATGCAAACTTCAAGCCATTGGTCGGAGAGATTGAGATTTCAAAACTTCTTGATCCAACCAGAGGAACCGGAAGTATAAGTGCAGTTGCCGGTTCCTTCGGTTACATACCCCCAGAATATGCATACACCATGCAAGTGACAGCACCTGGAAATGTTTACAGCTATGGTGTTGTTTTGTTGGAAATCCTTACATCTCGACAACCTGTTGAAGAAGATTTTGGCGAAGGCGTAGATTTGGTGAAGTGGGTTCAAAGTGCTCCTGTAAGAGGCGAAACTCCAGAGCAGATACTTGATGCAAGGCTTAGCACAGTTTCCTTCGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTTGCGTTGCTTTGCACCGACGGCACACCAGCCAAACGACCGAAAATGAAGAATGTAATTGAAATGCTTCGAGAAATTAAGTAA 2562 0.4083 MEILCLLYIVLGLYVSVGEFVGAELQDQAIIQAINQELRVPEWSDANISDYCTWQGVLCGNHSMVEKLDLSHRSLRGNVSLISELKSLKLLDLSNNNFGGLIPLAFGDLSELEVLDLSSNKFEGSIPSQFGDLRSLKSLNISNNLLVGELPMELHGLKKLQDLQLSSNQLSGFIPSWVGNLTNLRVFSAYENRLDGRIPDNLGLIPELQILNLHSNQLEGPIPASIFASGKLEVLVLTQNNFSGDLPEEIGNCRGLSSIRIGNNHLVGTIPKTIGNLSSLTYFEADNNNLSGELVSEFARCSNLTLLNLASNGFSGMIPQEFGQLMDLQELILSGNGLFGDIPKPILSCKSLNKLDISNNKFNGTIPNEICNISRLQYLLLNLNSIRGEIPHEIGSCAKLLELQLGSNYLTGTIPPEIGRIRNLQIALNLSFNHLHGPLPPELGKLDKLVSLDVSNNRLSGNIPTELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPTSSFLGNKGLCGDPLNSSCGNIYDVHGSYHHKVSYRIVLAVIGSGLAVFTSVTIVVLLFMIRERQEKAAKEAAGIVDDPTDDKPTIVAGTVFVDNLQQAIDLDAVVNATLKDSNKLSSGTFSSVYKATMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKLLHESTKQPEYQPDWPTRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTRGTGSISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTSRQPVEEDFGEGVDLVKWVQSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDGTPAKRPKMKNVIEMLREIK 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02345 853 ProSitePatterns Tyrosine protein kinases specific active-site signature. 697 709 IPR008266 GO:0004672|GO:0006468
Vifa5g02345 853 Gene3D Ribonuclease Inhibitor 307 412 IPR032675 -
Vifa5g02345 853 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Vifa5g02345 853 SMART LRR_typ_2 109 132 IPR003591 -
Vifa5g02345 853 SMART LRR_typ_2 373 397 IPR003591 -
Vifa5g02345 853 SMART LRR_typ_2 205 229 IPR003591 -
Vifa5g02345 853 SMART LRR_typ_2 85 108 IPR003591 -
Vifa5g02345 853 SMART LRR_typ_2 157 181 IPR003591 -
Vifa5g02345 853 SMART LRR_typ_2 446 469 IPR003591 -
Vifa5g02345 853 PRINTS Leucine-rich repeat signature 88 101 - -
Vifa5g02345 853 PRINTS Leucine-rich repeat signature 109 122 - -
Vifa5g02345 853 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 279 853 - -
Vifa5g02345 853 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 654 853 - -
Vifa5g02345 853 Pfam Protein tyrosine and serine/threonine kinase 658 848 IPR001245 GO:0004672|GO:0006468
Vifa5g02345 853 Gene3D Phosphorylase Kinase; domain 1 578 661 - -
Vifa5g02345 853 SUPERFAMILY Protein kinase-like (PK-like) 606 849 IPR011009 -
Vifa5g02345 853 Gene3D Transferase(Phosphotransferase) domain 1 662 853 - -
Vifa5g02345 853 SUPERFAMILY L domain-like 198 528 - -
Vifa5g02345 853 SUPERFAMILY L domain-like 37 292 - -
Vifa5g02345 853 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 229 519 - -
Vifa5g02345 853 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 577 670 - -
Vifa5g02345 853 Gene3D Ribonuclease Inhibitor 25 297 IPR032675 -
Vifa5g02345 853 Gene3D Ribonuclease Inhibitor 413 514 IPR032675 -
Vifa5g02345 853 ProSiteProfiles Protein kinase domain profile. 607 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02345 853 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 56 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02345 Vifa-Chr5 768907486 768910228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02345 1 853 Receptor kinase-like Gene Family AT2G41820 69.482 0.0 1220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g02345 PK_Tyr_Ser-Thr 2.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02345 - - gmx:100789684 1414.05