Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02344 ATGGCGTTAACGTCATCGCTCTTCGACTTGGCAGATTCACTGATAGCAAAGGTTGCTTCTCTGGCATGTGAAGAAGCTTCTCAGGTGCTGAATGTATATGCGGATCTTCAACAGTTCACACAGACTATTTCATACATCAAATCTGTGCTCATGGATGCTGAACAAAAACAGAAAAGTTCAACCGATGAGTTTTGGGAGCTGAGGAATTGGATGTGGCGGGTACGAAATGTTCTCTTGGATGCGGAAAACGTGCTTGATGAAGTTGAGTTTCGAAACCTAAGAAAGAAAGCTAATGATAGCACAATGATAACCAAGGTCTTCTTCTCATCTTCTAATCCAATTGTTTTCCGATTTAGAGTGGCTCATAAAATTAAAGAAATCAACAAGCGGTTAGACAAGATTGCAGCTGATAGGAATAACTTTGGTCTTCAGACAATTGAAATTCACAATGACACGCAAGTAGCACATGGGGGAGAAATGACATACTCCCGTGTGATTAATTCAGATGTGATAGGAAGACAACATGATAAAGAAAAGATTATCAAGATTTTGGTTCAGCATGACAATAATGATACAAATCTCTCTGTTATTCCCATTGTGGGGCTTGGAGGCCTCGGAAAGACCACACTTGCAAAGTTTGTGTTTAATGATCAGAAGATAAGTGAGTATTTCTCATCCAAGATGTGGGTGAGTCTTTCAGGTAGCTTTGATATGAAAGAAGTGATTATTAAGATCATCAATTCTGCTAATGACTCTGCTAAAGTGGATGCTCCTGCTTACCAACTAAATTATAGAGATTTAGATATCGAGCAACTGCAAAATCATCTTATAAACAAACTTAAAGGTCAAAATTTTCTACTTGTCTTAGACGACGTGTGGAATGAAGATCGTGTTAAATGGATTCAGGTGAGGGATTTACTACAAGTGGGTGCTCTAGGAAGTAAAATCTTATTTACTACGCGTAGCCACTCGATTGCTTCCATGATGGGAACCGTTTCCTCACACAACTTAGAAGGCCTTTCTCTTGAAGATTCGTTGTCTCTATTTGTCAAATGGGCCTTTAAAGAAGGAGAAGCAAGGAGGTATCCACATTTGGTAAATATTGGAAGGGAAATTGTGAAAAAATGTGGTGGGATTCCCTTGGCAGTGAGAACAGTTGGGAGTTTACTTTTCTCAAAATATGAGACAGTTGAGTATTGGGAAAACGTGAAAGACAACGAAATTTGGAATTTACCGGATGCACATGGAATTTTACCTGCACTTGAGTTAAGCTATCGTCGAATGCCATCCGCTATGCAGAAATGCTTTGCTTTGTTCTCCCTTTACCCAAAGGGTCATGCATTTGATAGTTTTCATGTAACATCACTATGGAGAGCGCTTGGTCTCCTTCCAACACCAAACAGAAACCCAAATCAAACATCGAAATATAGTGCTAGCCATTATTTGTTGGAAATGCTGTCAATATCTTTTCTTCAAGATTTTGTAGACTATGGCATTGGTTTCACTTTCAAAATGCATGATTTGGTGCATGATCTTGTTAAGCAAGTTGCATCGAAGGACCTTGTGGTATGTTGTTACCCTACTGATTTCCTAGATTCACGTGTTCACCATCTGTCTTACACTGAAAACAAAGAGCTTGATGAATTTCCCTTTCAACACTTAAAATTTGTGAAGAGCATACTATTTCCTATTGCTGGAGTTGGATCACACAGTAAAGCTTTCTTGAATGGTTGCATGTCAAATTGTAAACACCTGCAGTTTTTTGATTTAAGCTATTCTACGTATGAGACCTTGCCCTGGGCCATTGGGAAGCTGGTGCATTTAAGATATCTCAGTCTTGAGAATAATAAAAAGATTAAGCGACTTCCAGTTTCTATTTGCTACCTCCTGAGGTTAGAAATGTTGATACTTAGTGGCTGTACAGAACTTGAGACACTTCCTAAAGGCTTAAAAAACTTGATCAATCTCCAACATTTGGAGATAACAACAAAGCAACGCGTTTTGCCAGAGGATGAGATTGCAAACTTGAGTTCTCTTCAGACTCTCAGAATCGAGTTTTGCAGCAATCTAGAGTCATTATTTGGAATGTTAAAACTTCCAACTCTCAAAGTATTGTGTGTTGCTAATTGTAAAGCTCTAAAGTCTTTGCCACTTGACATTGAACATTTTCCTGCATTAGAGACATTGTTACTTGACAACTGTGACATGTTGCAGTTGTCAGAGGGACATGAGGAGCAAAACTCCAGCATGAGATTGAAGGTTCTAATTATTGTTTCAATGCCGCAGTTGGTGATCTTGCCTTATTGGCTTCAAGGGTCCTTGAATACATTAAAATACTTGTCAATTTCAAGCTGCAACAATCTTGTGGCACTTCCACAGTGGCTGTCAGATATGAACAGCCTGAAAACACTATATATCATAGGTTGTCCTAATATAATGTCTCTCCCTAATGACTTTCATCGCCTCATCAACCTTGAACGATTAGAAATTGATGGTCATCTTGAATTGCTTAGAAAACCTCAGCAAGAAATTGGAGAGTCTTCGCGCCCACACGATGCTGCAGATGAACCAGACGAAGTGGTAGAAGAATTGGAATAA 2598 0.3907 MALTSSLFDLADSLIAKVASLACEEASQVLNVYADLQQFTQTISYIKSVLMDAEQKQKSSTDEFWELRNWMWRVRNVLLDAENVLDEVEFRNLRKKANDSTMITKVFFSSSNPIVFRFRVAHKIKEINKRLDKIAADRNNFGLQTIEIHNDTQVAHGGEMTYSRVINSDVIGRQHDKEKIIKILVQHDNNDTNLSVIPIVGLGGLGKTTLAKFVFNDQKISEYFSSKMWVSLSGSFDMKEVIIKIINSANDSAKVDAPAYQLNYRDLDIEQLQNHLINKLKGQNFLLVLDDVWNEDRVKWIQVRDLLQVGALGSKILFTTRSHSIASMMGTVSSHNLEGLSLEDSLSLFVKWAFKEGEARRYPHLVNIGREIVKKCGGIPLAVRTVGSLLFSKYETVEYWENVKDNEIWNLPDAHGILPALELSYRRMPSAMQKCFALFSLYPKGHAFDSFHVTSLWRALGLLPTPNRNPNQTSKYSASHYLLEMLSISFLQDFVDYGIGFTFKMHDLVHDLVKQVASKDLVVCCYPTDFLDSRVHHLSYTENKELDEFPFQHLKFVKSILFPIAGVGSHSKAFLNGCMSNCKHLQFFDLSYSTYETLPWAIGKLVHLRYLSLENNKKIKRLPVSICYLLRLEMLILSGCTELETLPKGLKNLINLQHLEITTKQRVLPEDEIANLSSLQTLRIEFCSNLESLFGMLKLPTLKVLCVANCKALKSLPLDIEHFPALETLLLDNCDMLQLSEGHEEQNSSMRLKVLIIVSMPQLVILPYWLQGSLNTLKYLSISSCNNLVALPQWLSDMNSLKTLYIIGCPNIMSLPNDFHRLINLERLEIDGHLELLRKPQQEIGESSRPHDAADEPDEVVEELE 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02344 865 PANTHER DISEASE RESISTANCE PROTEIN RP 68 741 IPR044974 GO:0006952
Vifa5g02344 865 Pfam NB-ARC domain 174 405 IPR002182 GO:0043531
Vifa5g02344 865 Gene3D Ribonuclease Inhibitor 699 847 IPR032675 -
Vifa5g02344 865 Gene3D Ribonuclease Inhibitor 533 698 IPR032675 -
Vifa5g02344 865 Gene3D - 424 516 IPR036388 -
Vifa5g02344 865 Pfam Rx N-terminal domain 13 102 IPR041118 -
Vifa5g02344 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 438 IPR027417 -
Vifa5g02344 865 PRINTS Disease resistance protein signature 196 211 - -
Vifa5g02344 865 PRINTS Disease resistance protein signature 376 390 - -
Vifa5g02344 865 PRINTS Disease resistance protein signature 279 293 - -
Vifa5g02344 865 PRINTS Disease resistance protein signature 772 788 - -
Vifa5g02344 865 MobiDBLite consensus disorder prediction 841 856 - -
Vifa5g02344 865 SUPERFAMILY L domain-like 504 832 - -
Vifa5g02344 865 MobiDBLite consensus disorder prediction 841 865 - -
Vifa5g02344 865 Gene3D - 161 334 IPR027417 -
Vifa5g02344 865 Gene3D - 11 125 - -
Vifa5g02344 865 Gene3D - 339 423 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02344 Vifa-Chr5 768194242 768196839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02344 179 829 WRKY Transcription Factor Family AT5G45050 21.194 1.44e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02344 - - tpra:123888340 1117.83