Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02322 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCTGCGGAGACCTCAGAAGCTCTAGCGGCGGCGAACGATCAGCTTTTACTGTATAGAGGATTGAAGAAAGCAAAGAAAGAAAGAGGATGTACTGCCAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGTAGCTCCATCTACCGCGGTGTCACTAGGCATAGATGGACGGGTCGTTACGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAGCAAGGTTTGGCTTGCGCATATGATGATGAGGAAGCAGCGGCTAGAGCCTATGATCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTAATTAATTTCCCAGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACATTTCAAGAGAAGAATACCTTGCGTCTTTGCGCCGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGTCGCTGGGATCCATCATATGGCCGAATGACTGGATCGGATTACTTCAGTAGCATGCATTATGGGGATGATTCAGCTGCCGAAAGTGAATATGTTAGTGGTTTCTGCATAGAAAGAAAGTTTGATTTAACAAATCACATCAAATGGTGGGGATCTAATAAGAATCGACAACCTGATGCTGGAACAAAACATGGTTTTGCTGGAGATATTTACAGTGAACTGAAAACATTGGAACAGAAAGTCCAACCAACAGAACCATACGAGATGCCAGAGTTGGGCCCGCTCCACAATGAGAAAAAGCATAAAAGTTCTTCAATCTCCGCCTTAAGTATATTGTCGCAGTCTTCTGCTTACAAGAGCATGCAAGAGAAAGCGGCAAAAAGACAAGAAAATAGCACTGATAATGATGAGAATGAAAACAAAAATATAGTCAATGAGTTGGATCGTGGGAAGGCGGTAGAGAAACCCTCAAATCATGATAGTGGCAATGATCGACTTGGCATTGCAATGGGAATGAGTGGGGCGTTGTCCCTTCAAAGAAATGTTTATCCATTGACGCCATTCTTGTCTGCACCACTTTTGACAGCCTACAACACTGTTGATCCACTAGTAGATCCTGTTCTTTGGACATCTCTCATTCCTATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACAGAGACTGATTCAACGTACACTATGTTTCAACCAGAGGAGTAA 1230 0.4398 MASSSSDPGKSAETSEALAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGLACAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNISREEYLASLRRKSSGFSRGLAKYRGLSSRWDPSYGRMTGSDYFSSMHYGDDSAAESEYVSGFCIERKFDLTNHIKWWGSNKNRQPDAGTKHGFAGDIYSELKTLEQKVQPTEPYEMPELGPLHNEKKHKSSSISALSILSQSSAYKSMQEKAAKRQENSTDNDENENKNIVNELDRGKAVEKPSNHDSGNDRLGIAMGMSGALSLQRNVYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLIPMLPAGLSRTAEVTKTETDSTYTMFQPEE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02322 409 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Vifa5g02322 409 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vifa5g02322 409 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Vifa5g02322 409 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
Vifa5g02322 409 FunFam AP2-like ethylene-responsive transcription factor 59 128 - -
Vifa5g02322 409 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Vifa5g02322 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 295 - -
Vifa5g02322 409 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Vifa5g02322 409 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Vifa5g02322 409 MobiDBLite consensus disorder prediction 253 273 - -
Vifa5g02322 409 MobiDBLite consensus disorder prediction 290 328 - -
Vifa5g02322 409 MobiDBLite consensus disorder prediction 287 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02322 Vifa-Chr5 762000383 762003872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02322 19 393 AP2-EREBP Transcription Factor Family AT2G41710 65.464 8.65e-167 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02322 AP2 2.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02322 K09285 - gmx:100814117 710.679