Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02321 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCTGCGGAGACCTCAGAAGCTCTAGCGGCGGCGAACGATCAGCTTTTACTGTATAGAGGATTGAAGAAAGCAAAGAAAGAAAGAGGATGTACTGCCAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGTAGCTCCATCTACCGCGGTGTCACTAGGCATAGATGGACGGGTCGTTACGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAGCAAGGTTTGGCTTGCGCATATGATGATGAGGAAGCAGCGGCTAGAGCCTATGATCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTAATTAATTTCCCAGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACATTTCAAGAGAAGAATACCTTGCGTCTTTGCGCCGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGTCGCTGGGATCCATCATATGGCCGAATGACTGGATCGGATTACTTCAGTAGCATGCATTATGGTGCAGGGGATGATTCAGCTGCCGAAAGTGAATATGTTAGTGGTTTCTGCATAGAAAGAAAGTTTGATTTAACAAATCACATCAAATGGTGGGGATCTAATAAGAATCGACAACCTGATGCTGGAACAAAACATGGTTTTGCTGGAGATATTTACAGTGAACTGAAAACATTGGAACAGAAAGTCCAACCAACAGAACCATACGAGATGCCAGAGTTGGGCCCGCTCCACAATGAGAAAAAGCATAAAAGTTCTTCAATCTCCGCCTTAAGTATATTGTCGCAGTCTTCTGCTTACAAGAGCATGCAAGAGAAAGCGGCAAAAAGACAAGAAAATAGCACTGATAATGATGAGAATGAAAACAAAAATATAGTCAATGAGTTGGATCGTGGGAAGGCGGTAGAGAAACCCTCAAATCATGATAGTGGCAATGATCGACTTGGCATTGCAATGGGAATGAGTGGGGCGTTGTCCCTTCAAAGAAATGTTTATCCATTGACGCCATTCTTGTCTGCACCACTTTTGACAGCCTACAACACTGTTGATCCACTAGTAGATCCTGTTCTTTGGACATCTCTCATTCCTATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACAGAGACTGATTCAACGTACACTATGTTTCAACCAGAGGAGTAA 1236 0.4409 MASSSSDPGKSAETSEALAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGLACAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNISREEYLASLRRKSSGFSRGLAKYRGLSSRWDPSYGRMTGSDYFSSMHYGAGDDSAAESEYVSGFCIERKFDLTNHIKWWGSNKNRQPDAGTKHGFAGDIYSELKTLEQKVQPTEPYEMPELGPLHNEKKHKSSSISALSILSQSSAYKSMQEKAAKRQENSTDNDENENKNIVNELDRGKAVEKPSNHDSGNDRLGIAMGMSGALSLQRNVYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLIPMLPAGLSRTAEVTKTETDSTYTMFQPEE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02321 411 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Vifa5g02321 411 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Vifa5g02321 411 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vifa5g02321 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 297 - -
Vifa5g02321 411 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Vifa5g02321 411 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Vifa5g02321 411 FunFam AP2-like ethylene-responsive transcription factor 59 128 - -
Vifa5g02321 411 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
Vifa5g02321 411 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Vifa5g02321 411 MobiDBLite consensus disorder prediction 255 275 - -
Vifa5g02321 411 MobiDBLite consensus disorder prediction 289 335 - -
Vifa5g02321 411 MobiDBLite consensus disorder prediction 292 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02321 Vifa-Chr5 762000383 762003872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02321 19 395 AP2-EREBP Transcription Factor Family AT2G41710 65.979 3.06e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02321 AP2 2.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02321 K09285 - gmx:100814117 705.671