Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02320 ATGGGAACTGCTTCGCGGCAGTTCAAGATTATGCTCAGAAAGAACTGGCTCCTCAAAATTCGTCATCCTTTCGTTACTGCTGCTGAGATTTTGCTCCCTGCGATTGTGTTGATGCTGTTAGCAGCTGTAAGAACAAGAGTGGATACACAAATTCATCCAGCTCAATCGCACATTCAAAAAGATATGTTTGTAGAAGTGGGGAAAGACACCGAAGAAACAAGGATGATGATAGATGTGCTGTCGATCAAATTTCCGATTTTGAAGCTTGTTAGTATTGTATACAAAGATGAGTTAGAGTTGGAAACATACATCCGGTCAGATGCTTATGGTACCTGTAATGACATAAGGAATTGTTCAGATCCCAAAATTAAAGGAGCAGTTGTGTTTTATGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCGGATGTTACAACAATAATGGATACAAATGGCCCTTTTCTCAATGACTTGGAACTTGGTGTTAGTGCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTGACACTCCAGCAAATGGTTGATTCATTTATATTATTTATAGCCCAACAACCTGAATTAAACTCAAATGCCGAAACTGTAAAGCTTCCTCTTCTAGGATTTAATGACACTGATTCCTCGCTAAAAGTTCCATGGACTCAGTTTAACCCTACTAACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAATTCCAAGCAATAGTAAAGAAAGTCATGGGAATATTGTATTTATTGGGGTTTCTCTATCCAGTTTCTCGCCTGATAAGTTATTCAGTGTTTGAGAAGGAACAAAAGATCAAAGAAGGACTCTATATGATGGGCTTAAAAGATGGCATATTTCATCTCTCTTGGTTTATCACATATGCTTTGCAGTTTGCAATTTCTTCTGCGGTCATTACAGCTTGCACCATGGATAATATATTCAAATATAGTGATAAGACACTGGTGTTTGCATATTTCTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTGATATCCACCTTTTTCAAAAGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCATTTCTTGGTGCCTTTTTCCCTTATTACACTGTCAACGACGAGGGAGTCTCTGTGATCTTGAAGGTTCTTGCTTCTCTACTTTCACCTACGGCATTTGCTCTGGGTTCTGTCAACTTTGCTGATTATGAGCGTGCTCATGTTGGGCTTCGTTGGAGCAACATATGGCGGGAGTCCTCTGGAGTGAACTTTTCTGCATGTCTTCTAATGATGATACTTGATACACTGCTCTATTGTGCAATTGGACTGTATTTCGATAAGGTTCTTCCAAGAGAGTATGGACAGCAATATCCATGGAACTTTATTTTCAAAAAAGATTTCTGGAGAAAGAAAAAAATTGTAAATAATTGTTCCTCCAGTTTTAAAGTTAAAATTGCTGGTAGTAGTTCTGAGCCAGAAAGGAATCTTTTGGGGCAAGATACTACCAATCCTGCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAGTGTATGATACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACAACTGACATTATATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGGAAAAGCACGACAATATCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGATTTTTGGAAAGAACATTGTCTCCGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGTCCACAACATGATATACTCTTTCCTGAATTGACTGTGAGAGAGCATTTAGAACTATTTGCTATATTAAAGGGTGTGGAGGAAGACACTCTGGAGAATGTTATTATTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACAATGTTGTGAGATCTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTAGTTGGAAACAGTAAGGTTATAATTCTTGACGAGCCTACAAGTGGAATGGATCCATATTCAATGCGATTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGAATAATTTTGCTTACAACACATTCCATGGACGAAGCAGATGAACTAGGTGACCGGATAGCCATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGATTAGCTAGAAAGCATAGCTCGAGGATGCTGAAAATTAGGAGCTGA 2301 0.3916 MGTASRQFKIMLRKNWLLKIRHPFVTAAEILLPAIVLMLLAAVRTRVDTQIHPAQSHIQKDMFVEVGKDTEETRMMIDVLSIKFPILKLVSIVYKDELELETYIRSDAYGTCNDIRNCSDPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQMVDSFILFIAQQPELNSNAETVKLPLLGFNDTDSSLKVPWTQFNPTNIRIAPFPTREYTDDQFQAIVKKVMGILYLLGFLYPVSRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSAVITACTMDNIFKYSDKTLVFAYFFIFGLSAIMLSFLISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSVILKVLASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFSACLLMMILDTLLYCAIGLYFDKVLPREYGQQYPWNFIFKKDFWRKKKIVNNCSSSFKVKIAGSSSEPERNLLGQDTTNPAIEAISLDMKQQELDGRCIQIRNLHKVYDTKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALIFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEDTLENVIINMADEVGLADKINNVVRSLSGGMKRKLSLGIALVGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGRLARKHSSRMLKIRS 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02320 766 Pfam ABC-2 family transporter protein 206 457 IPR013525 GO:0016020|GO:0140359
Vifa5g02320 766 FunFam ATP-binding cassette sub-family A member 12 528 760 - -
Vifa5g02320 766 Pfam ABC transporter 556 699 IPR003439 GO:0005524
Vifa5g02320 766 SMART AAA_5 564 746 IPR003593 GO:0016887
Vifa5g02320 766 Gene3D - 523 764 IPR027417 -
Vifa5g02320 766 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 528 753 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vifa5g02320 766 CDD ABC_subfamily_A 536 751 - -
Vifa5g02320 766 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 536 766 IPR003439 GO:0005524
Vifa5g02320 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 754 IPR027417 -
Vifa5g02320 766 ProSitePatterns ABC transporters family signature. 671 685 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02320 Vifa-Chr5 761293622 761312693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02320 536 751 Calmodulin-binding Proteins AT2G36910 24.554 8.72e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02320 K05643 - gmx:100803263 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02320 5 761293622 761312693 Vifa5g02320 5 761293622 761312693 ECH