Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02319 ATGGGAACTGCTTCGCGGCAGTTCAAGATTATGCTCAGAAAGAACTGGCTCCTCAAAATTCGTCATCCTTTCGTTACTGCTGCTGAGATTTTGCTCCCTGCGATTGTGTTGATGCTGTTAGCAGCTGTAAGAACAAGAGTGGATACACAAATTCATCCAGCTCAATCGCACATTCAAAAAGATATGTTTGTAGAAGTGGGGAAAGACACCGAAGAAACAAGGATGATGATAGATGTGCTGTCGATCAAATTTCCGATTTTGAAGCTTGTTAGTATTGTATACAAAGATGAGTTAGAGTTGGAAACATACATCCGGTCAGATGCTTATGGTACCTGTAATGACATAAGGAATTGTTCAGATCCCAAAATTAAAGGAGCAGTTGTGTTTTATGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCGGATGTTACAACAATAATGGATACAAATGGCCCTTTTCTCAATGACTTGGAACTTGGTGTTAGTGCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTGACACTCCAGCAAATGGTTGATTCATTTATATTATTTATAGCCCAACAACCTGAATTAAACTCAAATGCCGAAACTGTAAAGCTTCCTCTTCTAGGATTTAATGACACTGATTCCTCGCTAAAAGTTCCATGGACTCAGTTTAACCCTACTAACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAATTCCAAGCAATAGTAAAGAAAGTCATGGGAATATTGTATTTATTGGGGTTTCTCTATCCAGTTTCTCGCCTGATAAGTTATTCAGTGTTTGAGAAGGAACAAAAGATCAAAGAAGGACTCTATATGATGGGCTTAAAAGATGGCATATTTCATCTCTCTTGGTTTATCACATATGCTTTGCAGTTTGCAATTTCTTCTGCGGTCATTACAGCTTGCACCATGGATAATATATTCAAATATAGTGATAAGACACTGGTGTTTGCATATTTCTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTGATATCCACCTTTTTCAAAAGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCATTTCTTGGTGCCTTTTTCCCTTATTACACTGTCAACGACGAGGGAGTCTCTGTGATCTTGAAGGTTCTTGCTTCTCTACTTTCACCTACGGCATTTGCTCTGGGTTCTGTCAACTTTGCTGATTATGAGCGTGCTCATGTTGGGCTTCGTTGGAGCAACATATGGCGGGAGTCCTCTGGAGTGAACTTTTCTGCATGTCTTCTAATGATGATACTTGATACACTGCTCTATTGTGCAATTGGACTGTATTTCGATAAGGTTCTTCCAAGAGAGTATGGACAGCAATATCCATGGAACTTTATTTTCAAAAAAGATTTCTGGAGAAAGAAAAAAATTGTAAATAATTGTTCCTCCAGTTTTAAAGTTAAAATTGCTGGTAGTAGTTCTGAGCCAGAAAGGAATCTTTTGGGGCAAGATACTACCAATCCTGCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAGTGTATGATACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACAACTGACATTATATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGGAAAAGCACGACAATATCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGATTTTTGGAAAGAACATTGTCTCCGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGTCCACAACATGATATACTCTTTCCTGAATTGACTGTGAGAGAGCATTTAGAACTATTTGCTATATTAAAGGGTGTGGAGGAAGACACTCTGGAGAATGTTATTATTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACAATGTTGTGAGATCTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTAGTTGGAAACAGTAAGGTTATAATTCTTGACGAGCCTACAAGTGGAATGGATCCATATTCAATGCGATTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGAATAATTTTGCTTACAACACATTCCATGGACGAAGCAGATGAACTAGGTGACCGGATAGCCATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTACACTTTAACTCTTGTGAAGTCTACTCCTGCTGCTTCTATAGCTGGTGATATTGTACACCGATATATTCCAACAGCAACTTGTATAAGTGAGGTTGGAACTGAGATTTCCTTCAGACTCCCTATGGCATCCTCCTCAACCTTTGAAAGGATGTTCAGGGAAATTGAAGGTTGCATGAAAAAGCCAGTTTTAAGGATGGAAATAAGTGGCAGTTATGAAAAAGACTGTCACGGTATTGAAAGTTATGGTATATCTGTAACAACCCTTGAGGAGGTATTCTTGAGAGTTGCTGGATGTGACTATGATGAAGTTGAATGCTCTGAAGAAACTAACCGCTCCCTTATATCAGAACCTGTAGTTTCTCTTACTTCTGATGATCGTCCATCCACAAAAATATGTTATTATAAAGTTTTTGGAAATTATAAGAAGATTATTGGCTTCATGTCTATGATGGTGGGGAGAGCTTGTGGTTTAATATTTACTGCAGTTATTAGTTTTATCAACTTCATAGGCATGCAGTGCTGTAGCTGTTGTCTCATTACTACGTCCACTTTTTGGCAACATTCTAAAGCTTTATTTATTAAGAGGGCAATATCTGCTCGCAGAGATCACAAAACAATTATGTTTCAACTAATAATTCCCGCTCTCTTCTTGTTTATTGGTCTTTTATTTATGGAGCTCAAGCCACATCCTGATCAGATTTCACTGACTCTTTCAACTTCTAATTTTAATCCTCTATTGAGCGGTGGGGGTGGGGGTGGTCCAGTTCCGTTTAACCTATCTTTTCCAATTGCAGAAAAGGTAGCACAAAATGTCAAAGGAGGTTGGATTCAAAGTTGTAGCCCAAGCTCATACAAATTCCCCAATTCAAAAAAGGCATTAGCTGATGCAATGGAAGCAGCTGGGCCAACTTTAGGACCTTCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGTGCAATTGTGATGGATGATCAAAATACCGATGGAAGTTTAGGCTATACTGTATTACACAACTTTTCTTGTCAGCATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTAGGCTTGCTACTCATGACATGAATGCCACAATTCAGACACGCAACCACCCTCTACCAATGACACAAAGCCAGCACTTACAACGTCATGACCTTGATGCTTTCTCTGCTGCCATCATTGTCAACATAGCCTTCTCTTTCATTCCTGCCTCATTTGCTGTTTCAATTGTTAAGGAACGAGAAGTGAAAGCTAAGCATCAACAACTAATCAGTGGGGTTTCAGTCCTTTCATATTGGGCCTCTACATTTATTTGGGACTTCGTGAGCTTCTTGTTTCCGGCCTCTTTTGCCATAGTTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTTGGGGGAGTTTCTTTGTTACCAACTATCATCATGCTTTTGGAATATGGACTTGCTAGTGCTTCGTCAACTTATTGCCTTACATTTTTCTTTTTTGACCACACTGTGGCCCAGAATGTGGTTCTCCTGGTTCACTTTTTTTCTGGATTGATACTAATGGTTATCTCATTCGTTATGGGACTCATCCCATCCACAATAAGCGCCAATTCTTTTCTTAAGAACTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGACGGACTTGCTTCATTAGCTCTTCTCCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTATGACTGGAATGTTACGGGTGCCTCCATTTGTTATCTTGCTGTTGAGAGCGTTGTTTATTTTTTATTGACACTCGGGCTTGAAATTTTTCCTTCTCTCAAATTGACTCCGTTCATGATCAAGAAGTGGTGGGGGGATATTAATATGTTCCCACATAATTCTACTTATCTGGAACCTTTATTAGAACCTCCTGAAACTGTTATTACGGACCTCAACGAAGACGTGGATGTGAAAACAGAAAGAAATAGAGTACTCTCAGGCTCCATTGACAATGCCATTATCTACTTGCGCAATCTTCGCAAGGTGTATTCTGAAGAGAAGAAACATGGGAAAAAGGTTGCAGTAGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACACTTTCTATGTTATGCGGGGAAGAATCTCCTTCTGACGGGACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCCAAGGCTGCTCGTAAACATATTGGGTATTGTCCACAATTTGATGCTCTGTTGGAATTCTTAACTGTAAAAGAGCATCTTGAGCTCTATGCTAGAATAAAAAGTGTTCCAGACTACACAATAGACAATGTTGTTATGGAAAAGTTGGTAGAGTTTGGCTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGAGGGAATAAAAGAAAACTATCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAACCATCCACAGGAATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCAGTTATTCTTACTACCCATAGCATGAATGAAGCTCAAGCCTTGTGTACCAGAATAGGGATTATGGTTGGTGGACAACTAAAATGTATTGGAAGCCCGCAGCATCTAAAGACAAGATTTGGCAATCATCTAGAACTAGAGGTAAAACCCACTGAAGTGAGTTCTGTGGACTTGCAAGCACTGTGCCAAGCTATTCAGGAAATGCTTTTTGATGTCCCTTCTCAACCTAGAAGCTTACTTAATGACCTTGAAATTTGCATTGGGGGTGCTGATTCCATCGCCTCAGGAAATACCTCCATTGCAGAGATTAGCTTGATACCAGATATGATAGGCTTAATTGGACGATGGCTTGGCAACGAAGAAAGAGTGAAGACTCTAATGTGCTGTACACCTGTCTATGACGGGGCCTCTCAGGAACAGTTATCTGAACAATTATTTCGAGATGGTGGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCCAAACAAAAATTCTCAGAAATTGATTCATTTATTCTCTCTTCATTTCGTGGAGCAAGATGCCAAGGATACAATGGTTTAAGCATCAGATACCAGTTACCTTATGACGAGGACATTTCTCTGGCAGATGTTTTTGGACTTCTTGAAGCAAACAGAGATAGGTTAGGAATTGCAGAGTACAGCCTCAGCCAATCAACTCTGGAGACAATATTTAATCATTTTGCAGCTAATTCTTGA 5604 0.3949 MGTASRQFKIMLRKNWLLKIRHPFVTAAEILLPAIVLMLLAAVRTRVDTQIHPAQSHIQKDMFVEVGKDTEETRMMIDVLSIKFPILKLVSIVYKDELELETYIRSDAYGTCNDIRNCSDPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQMVDSFILFIAQQPELNSNAETVKLPLLGFNDTDSSLKVPWTQFNPTNIRIAPFPTREYTDDQFQAIVKKVMGILYLLGFLYPVSRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSAVITACTMDNIFKYSDKTLVFAYFFIFGLSAIMLSFLISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSVILKVLASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFSACLLMMILDTLLYCAIGLYFDKVLPREYGQQYPWNFIFKKDFWRKKKIVNNCSSSFKVKIAGSSSEPERNLLGQDTTNPAIEAISLDMKQQELDGRCIQIRNLHKVYDTKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALIFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEDTLENVIINMADEVGLADKINNVVRSLSGGMKRKLSLGIALVGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSTPAASIAGDIVHRYIPTATCISEVGTEISFRLPMASSSTFERMFREIEGCMKKPVLRMEISGSYEKDCHGIESYGISVTTLEEVFLRVAGCDYDEVECSEETNRSLISEPVVSLTSDDRPSTKICYYKVFGNYKKIIGFMSMMVGRACGLIFTAVISFINFIGMQCCSCCLITTSTFWQHSKALFIKRAISARRDHKTIMFQLIIPALFLFIGLLFMELKPHPDQISLTLSTSNFNPLLSGGGGGGPVPFNLSFPIAEKVAQNVKGGWIQSCSPSSYKFPNSKKALADAMEAAGPTLGPSLLSMSEYLMSSFNESYQSRYGAIVMDDQNTDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHDMNATIQTRNHPLPMTQSQHLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFIWDFVSFLFPASFAIVLFYIFGLDQFVGGVSLLPTIIMLLEYGLASASSTYCLTFFFFDHTVAQNVVLLVHFFSGLILMVISFVMGLIPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVYDWNVTGASICYLAVESVVYFLLTLGLEIFPSLKLTPFMIKKWWGDINMFPHNSTYLEPLLEPPETVITDLNEDVDVKTERNRVLSGSIDNAIIYLRNLRKVYSEEKKHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARKHIGYCPQFDALLEFLTVKEHLELYARIKSVPDYTIDNVVMEKLVEFGLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLKCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLLNDLEICIGGADSIASGNTSIAEISLIPDMIGLIGRWLGNEERVKTLMCCTPVYDGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARCQGYNGLSIRYQLPYDEDISLADVFGLLEANRDRLGIAEYSLSQSTLETIFNHFAANS 1867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02319 1867 Pfam ABC-2 family transporter protein 968 1370 IPR013525 GO:0016020|GO:0140359
Vifa5g02319 1867 Pfam ABC-2 family transporter protein 210 457 IPR013525 GO:0016020|GO:0140359
Vifa5g02319 1867 SMART AAA_5 1469 1655 IPR003593 GO:0016887
Vifa5g02319 1867 SMART AAA_5 564 746 IPR003593 GO:0016887
Vifa5g02319 1867 CDD ABC_subfamily_A 1439 1665 - -
Vifa5g02319 1867 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1439 1677 IPR003439 GO:0005524
Vifa5g02319 1867 CDD ABC_subfamily_A 536 757 - -
Vifa5g02319 1867 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 963 1375 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vifa5g02319 1867 FunFam ATP-binding cassette sub-family A member 12 528 773 - -
Vifa5g02319 1867 ProSitePatterns ABC transporters family signature. 671 685 IPR017871 GO:0005524|GO:0016887
Vifa5g02319 1867 Gene3D - 523 772 IPR027417 -
Vifa5g02319 1867 Gene3D - 1431 1681 IPR027417 -
Vifa5g02319 1867 Pfam ABC transporter 556 699 IPR003439 GO:0005524
Vifa5g02319 1867 ProSitePatterns ABC transporters family signature. 1576 1590 IPR017871 GO:0005524|GO:0016887
Vifa5g02319 1867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1433 1671 IPR027417 -
Vifa5g02319 1867 Pfam ABC transporter 1461 1603 IPR003439 GO:0005524
Vifa5g02319 1867 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 536 769 IPR003439 GO:0005524
Vifa5g02319 1867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 775 IPR027417 -
Vifa5g02319 1867 FunFam ABC transporter A family member 1 1428 1682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02319 Vifa-Chr5 761266954 761312693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02319 536 762 Calmodulin-binding Proteins AT2G36910 25.316 2.05e-16 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02319 K05643 - gmx:100803263 3250.3