Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02318 ATGGAAGGAGGGTTATTGGAGTGTGGAAGAAAGTGCACTCCATCACCTTTCTTGTTGAAGACATATATGTTGGTGGAGGATCCGGGGACCGATGAGGTGATATCGTGGAACGACGAAGGAACCGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTTCTTCCAACACTCTTCAAGCATAGCAATTTCTCTAGCTTTGTACGCCAACTCAATACTTATGGGTTTCGTAAAGTTGCAACAAGTAGATGGGAATTTTGCAATGAAAAATTCAAGAAAGGTGAAAGAGAGCTACTAACTGAGATTCGGCGAAGGAAAGCATGGTGCAACAAGCAACAACGTACGATACAAAACCAAGATTCTGATGAAGATCAAAGGTCATCATCAACCTCGTCAACTTCGGGATACACTAATCTTGTGGATGAAAACAAGCGACTGAAGAAGGAAAATGTGGTGTTGAGTTCTGAGTTAGCAAGCACGAAAAGGAAATGTAAGGAACTACTTGATTTGGTGACAATTTGTAACAAGAGACAGGAAGAGGAAAAGGCTAAGGATGATGATGAAAGGCCAATGCTGTTTGGAGTGAGATTGGATGTTCAACAAGGAGAGAGAATGATGAAAAGGAATAGAGCTGAGATTAGTGAAAGTGCAAGTATTTTGTTGTCACAATCATGCAAATAG 684 0.424 MEGGLLECGRKCTPSPFLLKTYMLVEDPGTDEVISWNDEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNEKFKKGERELLTEIRRRKAWCNKQQRTIQNQDSDEDQRSSSTSSTSGYTNLVDENKRLKKENVVLSSELASTKRKCKELLDLVTICNKRQEEEKAKDDDERPMLFGVRLDVQQGERMMKRNRAEISESASILLSQSCK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02318 227 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02318 227 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Vifa5g02318 227 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02318 227 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02318 227 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02318 227 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02318 227 FunFam Heat stress transcription factor B-4 9 107 - -
Vifa5g02318 227 MobiDBLite consensus disorder prediction 114 140 - -
Vifa5g02318 227 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02318 227 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 189 IPR027725 -
Vifa5g02318 227 Gene3D - 9 107 IPR036388 -
Vifa5g02318 227 Coils Coil 137 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02318 Vifa-Chr5 760988889 760989986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02318 14 172 HSF AT2G41690 62.147 6.39e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa5g02318 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02318 K09419 - gmx:100802739 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02318 5 760988889 760989986 Vifa5g02318 5 760988889 760989986 ECH