Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02304 ATGGCAGAATCATTTCTTTTCGATATTGCTAATTCACTCCTAGGGAAGCTTGCTTCTTATGTCTATGATGAAGCTTCTCAAGCCTTTGGAGCGTATAAAGATCTACAAAGGATCAAAGACACTTTGTCAATTGTTAAAGGTCTGCTACTGGATGCTGAGTATAAGAAGGATAAACAACATGGTGTGAGTGAATGGCTGAGACAGATTCAAAACATCTGCTCAGATGCTGAAGATGTATTAGATGGATTTGAGTTCCAACACAAGAGGAAACAAGTTGTGGAAGCTTCAGAAAGCACGCGGGTGAAGGTACGCCACTTCTTTTCTTCCTCAAATCCACTTGCTTTCCGTTTTAGCATGGCACATCAAATCAAAAAGATTAGGGATAGATTGGATAAGGTAGCAGCTGATGGGACCAAGTTTGGTCTTGCGAAAATTGATGATGCTCCTGAACTTCTAAGGAGAGAATTGACTCATTCCTATGTTGATGCTTCAAGTGTAATTGGGAGGGAGAATGATAGGGAAGAAATTATCAAGCGTCTGATGCAACCACATCCTCAGAGTGATTGTGGTGATGGTGGTAAAAGTTTGTGTGTTATTCCAATTGTGGGAATGGGAGGCTTGGGGAAGACTTCACTTGCTAAGTTGGTGTTCAACGATAGAAGGATGAACCAACTTTTCCAAATGAAGATTTGGGTGTGTGTCTCTGAGGATTTTGACATCAAGCAGATACTTATTCAAATCATCAACTCAGCTTTGGTTTCTACTATTCCATCTGCTTCAGCTCTAACTAACGTGCTTTCTCACCAAGAAAACATTACAAACTTGAATATTGAGCAGCTACAAAGCCGTCTTAGAAATAAACTTCATGGTCAAAAGTTTTTACTCGTGTTAGATGACGTTTGGAATGATGACCGTGCAAAATGGATTGAGTTGGAAGATTTGATAAAGTCCGGCTCAGCAGAAAGCAAAATCATTGTGACAACGCGTAGTAGCTCTGTTGGTTCAATGATGGGTACTGTTCGCTTGTATGTCTTGGAAGGTCTTTCTATAGAGAATTGCTTATCCTTGTTTGTCAGATGGGCATTGAAGGAAGGGGACGAAATTAAATATCCAAATCTAGTGGAAATTGGTAAAGAAATTGTGAAAAAATGTCAAGGGGTTCCACTAGCCGTGAAAACATTAGGAAGTTCTTTGTTTTCAAAACTTGATTTAGATAAGTGGATACTTGTAAGAGACTCCGAGATATGGAACTTAAAGCATAGGAAAGATGATATTTTGTCTGCTTTGAAGTTAAGCTATGATCAAATGCCATCCTATTTGAGGCAATGTTTTTCTTATTTTTCCCTTTATCCCAAAGACTTTACCTTCAATAGTTTTGAAATTATTATTCTTTGGGTAGCACTTGGATTAGTTCAATTCCAGACAGGAGGAGAAAAGGTAGAGAATGTAGCAAGAGAATATATTGATGAGTTAAATTCAAGATCATTTCTTCAGGATTTCGAAGACTATGGCTACTATTGCAAGTTCAAGGTACATGATCTGGTGCATGAACTTGCACTATATGTTGCAAAAGAGGACTTTGCGGTGATAGGCACGCAAACTCAAAGTATATTTGATCATGCAAGACATTTATCAATCGTTGACGATAATTCATGTGGCCGTGTTTTGTTTCCGAAGTCTAGGAGTGTAAGAACTATACTATTTCCCATGGAAGGGGTAGGTCTTGCTGATGAAACTCTATTATATTCACTGGTATCAAGATACAAATACTTAAGGTATTTAGATTTAAGTGATTCTTCATTTGAGTTCCTACCTAATTCAATTGCTAAATTGGAGCACCTTCGAGTTCTTGATCTTTCCGGTAACTGCAAAATAAAATATCTTCCCCATTCTATATGGAAACTCCAAAATTTGCAAGTTTTGGCACTTGGTGGATGTACAGAACTTGAAACACTTCCTAAAAGATTAGGGAAGATGATCAGCCTGCGACAACTGATTATAACAAGTAAACAATCTGACCTTTCAGAGAATGAATTTGCAAGCTTAAACCATCTTCGAATTTTGGGTTTTCATTATTGCCAGAATTTGAAGTATTTGTTCAAATACAACCAACTCCAGTCCCTTGAAACGTTGTTTGTTATATCATGTGGGATCTTGGAGTTACCTCTTTATATGTTCCCAAATTTACAGACTCTGTATATTAGTGACTGTAATAACTTACACTTGTCAGCCTACAGCAGAAAACCCGTCCAAACATTGAAGATGAAATATCTACATCTCGAGGGCTTTCCCGAGCTATCCACATTGCCTGATTGGATTGCAAGTGCCAAAGACACTCTAGAGACCTTGATTATTGTCAATTGTCCCAATCTAAAGAAGTTTCCTAAATGGCTAATAAATATGTCGCATCTTAAGAGGCTCTATATCAGTGAATGTCGTCTTCTTTGGAGGATTGTGCTTCCAGGTCACATGTTTTACCTCACCGCCCTTGAAAATTTGCACATAGATGGATGTCCTGATTTGTATCGACAATATCAACCACAATGTGGTGTGCATTGGTACGAGATTGCTCACATCAAAAGTGTTTACATTGGAGAACCAAGAGGAGAAGAGGAATGA 2619 0.3826 MAESFLFDIANSLLGKLASYVYDEASQAFGAYKDLQRIKDTLSIVKGLLLDAEYKKDKQHGVSEWLRQIQNICSDAEDVLDGFEFQHKRKQVVEASESTRVKVRHFFSSSNPLAFRFSMAHQIKKIRDRLDKVAADGTKFGLAKIDDAPELLRRELTHSYVDASSVIGRENDREEIIKRLMQPHPQSDCGDGGKSLCVIPIVGMGGLGKTSLAKLVFNDRRMNQLFQMKIWVCVSEDFDIKQILIQIINSALVSTIPSASALTNVLSHQENITNLNIEQLQSRLRNKLHGQKFLLVLDDVWNDDRAKWIELEDLIKSGSAESKIIVTTRSSSVGSMMGTVRLYVLEGLSIENCLSLFVRWALKEGDEIKYPNLVEIGKEIVKKCQGVPLAVKTLGSSLFSKLDLDKWILVRDSEIWNLKHRKDDILSALKLSYDQMPSYLRQCFSYFSLYPKDFTFNSFEIIILWVALGLVQFQTGGEKVENVAREYIDELNSRSFLQDFEDYGYYCKFKVHDLVHELALYVAKEDFAVIGTQTQSIFDHARHLSIVDDNSCGRVLFPKSRSVRTILFPMEGVGLADETLLYSLVSRYKYLRYLDLSDSSFEFLPNSIAKLEHLRVLDLSGNCKIKYLPHSIWKLQNLQVLALGGCTELETLPKRLGKMISLRQLIITSKQSDLSENEFASLNHLRILGFHYCQNLKYLFKYNQLQSLETLFVISCGILELPLYMFPNLQTLYISDCNNLHLSAYSRKPVQTLKMKYLHLEGFPELSTLPDWIASAKDTLETLIIVNCPNLKKFPKWLINMSHLKRLYISECRLLWRIVLPGHMFYLTALENLHIDGCPDLYRQYQPQCGVHWYEIAHIKSVYIGEPRGEEE 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02304 872 SUPERFAMILY L domain-like 510 844 - -
Vifa5g02304 872 Gene3D - 10 124 - -
Vifa5g02304 872 Pfam NB-ARC domain 194 434 IPR002182 GO:0043531
Vifa5g02304 872 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vifa5g02304 872 CDD RX-CC_like 2 134 IPR038005 -
Vifa5g02304 872 PRINTS Disease resistance protein signature 287 301 - -
Vifa5g02304 872 PRINTS Disease resistance protein signature 609 625 - -
Vifa5g02304 872 PRINTS Disease resistance protein signature 384 398 - -
Vifa5g02304 872 PRINTS Disease resistance protein signature 198 213 - -
Vifa5g02304 872 Gene3D Ribonuclease Inhibitor 563 850 IPR032675 -
Vifa5g02304 872 Gene3D - 348 431 IPR042197 -
Vifa5g02304 872 Gene3D - 152 341 IPR027417 -
Vifa5g02304 872 PANTHER DISEASE RESISTANCE PROTEIN RP 37 814 IPR044974 GO:0006952
Vifa5g02304 872 Pfam Leucine rich repeat 590 646 IPR001611 GO:0005515
Vifa5g02304 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 446 IPR027417 -
Vifa5g02304 872 Gene3D - 432 521 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02304 Vifa-Chr5 757298247 757305370 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02304 199 401 WRKY Transcription Factor Family AT5G45050 28.155 8.29e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02304 - - gmx:100795479 1094.72