Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02298 ATGGATCACAGAACGAAACCTAACGATTCGTTCTCTTACTCCACTCTCTTCAATCTCCAGTCTTTGATCAACTTTGAACTTCCAGAACAAGATGATGATTTTGAGTATTATGGGAATAGTAGTCAGGATGAGAGCAGAAACAGCCGAGGTGGGGCAGTTGCAAGTCATAGTAATGGGAATGTGTTGAATAAGAGGAGTCGGTCTGGAAACAGTGACAACGAGGAAAAAAGTGGTTTTCACGGGGCACATACGATGGAAGAACGATACCGATCAATGCTTGGAGACCATATTAAGAAATACCAGAGAAGGTTTAAGGGTACCACGGCTAGTCCGGACACGAAGCAGGTTGCTGTTCCGTTTGCAAAAGCTAACAATGGATTAAAAGCTCATAAGATGGGGAGTGAGCGTAGGCGAGGATTGCTTGATGAAGAGACTATGTCTGAATGGATGAATGGTTCTAATGTTCAGAAACCAGGGAACCTTCTTGATACGGATTTCGTACGGCAACATAGCTCTGATAGGGTTATGTATGAACCTGCTTCTGTGAATATTGGGGATGGTGTGACTTATAAGATTCCTCCAATTTATGATAAGTTGGCAGCAATGGTGAACCTTCCAAGCTTCTCAGATATCCACGTTGAGGACTTCTACCTTAAGGGTACATTGGATTTGGGCTCCTTGGCTGAAATGATGGCATCTGATAAAAAGTTTGGGAATAGAAACCGGGCCGGCATGGGGGAAACTGTATCCCAATATGAATCACTTCAAGCACGTCTAAAGGACACACCAGTTTCTAATTCAGCTCACAAGTTCAGTCTGAAACTATCTGATGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCTGGAAGCATAAAGCGGTCTATTTTATCTGAGGGGGGTATATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGAGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGGTAAAGAAAGACCCTGAGTTAATAGAGAAAGAGGAAATGGATAAGTTTGGAAAGATTTGGGTAAATATTGTTAGAAGAGACCTACCAAGGCATCATAGGAATTTTACCACTTTTCATCGAAAGCAGCTCGTTGATGCTAAGAGGGCTGCAGATAACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCTAGCATGCGCTCCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAACGAATAGATAAGGAGATGTTAGAAGTAAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGCGAGCAGGAGATTCGAGAAGCCAAGAGGCAGCAGCAAAGGCTAAATTTTCTAATACAACAGACTGAGCTATACAGTCACTTTATGCAGAACAAGTCAATATCTTCAGAAGCTCTATCCATGGCAGATGAAAATACAAATGATGAAAATGCACTGATCAACTCTTCAGCTGCTGGTCGTAACGAGGAGGAAGATCCGGAAGAGGCTGAATTGAGGAGGGAAGCTTTGAAAGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTAACAAATGCTTTTGACAGTGAATACTTGAGGCTGCGCCAGGCTGGTGAATCTGATTCACTTCAACCAGAAGTTTCTGGAGCAAGTAATATTGACTTGAAAACCCCCTCCACCATGCCCGTGGCATCGACAGTTCGGACACCTGAATTATTTAATGGCTGTCTCAAAGATTATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCTGAGGAGAAAAACATATGGGGACCTTTTTTGGTTGTTGCACCTGCTTCTGTATTGAATAATTGGAATGAGGAACTCGAGCGCTTCTGCCCCGAACTGAAAGTACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAACCCAAAGGATCTTTACCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCTCTGACGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGACGAAGCTCAGGCAATTAAAAGTTCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACCGGTACACCTGTTCAGAATAATATGGCCGAGTTATGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTAAATGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGCTTCGGCGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTAGCAAAACTGAAGTTACCGTGCACTGCAAGTTAAGTTCCCGGCAACAAGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAAAATCTTGAATTTAATGAACATTGTTATTCAACTGAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGGAGCACATACCTTTACTTTGGAAAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGGATGTATATTATTCGGGTGGTCACAACCCCATCTCATATGAGATACCTAAACTTGTCTATCAAGAAATTTTGCGGAGTTCTGTAACTCTCAGTTCAGATGTTGGTCATGAAGATATGCATGTTCAAAGTGGAACCTTTGGGTTTACCCATTTGATGGGTTTGTCTCCTCAAGAGGTGACATTTCTGGTTACTGGTTCTTTTATGGAGCGACTGTTATTTTCTATGATGAGATGGGAACAAAAATTCAGTAGTGAAGTTTTAGACTTTCTTACGGAGACCATAATTGATGATCTGGAATGTAGCTACCTTGAAGAAGGAAAAGTGAGAACTGTTACTCGAATGTTGTTGGTACCGTTGAGATCTGAGACTAAGTTTCTTCAAAACAGATTGCCAACGGGACTCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCACATCAGGAGAGGATTTTATCAAATGCAAGGCTTCTCCACTCAGCTTACACATATATTCCAAAAAGTAGAGCACCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTACTATAACATGATTGAGGAATTACATGATCCATGGGTTAAGAGGATGTTTGTGGGATTTGCCCGTACATCTGATTGTAATGGGCCTAGAAAGCCAGATGGTTCTCATCATTTAATTCAAGAAATCGACTCTGAACAATCTGTCTGTAAACCTGCTCTTCAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGCGAAACTTTGACCCAGCAAAATTGCTTACCGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTAAGAGCAGGAAATCATCGCGTTCTCTTGTTTGCTCAGATGACCAAGATGCTAAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGATGGATCAACATCTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCACAGGGCTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATTAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAAACAAAAGATGTTACTGTCTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTCAGAGCTAGTCAGAAAAGTACTGTACAGAATCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTTAAAGCTATAACTGTCCAGGGTAGGGATAAGCAAAAGAAAAAACCTATGAAGGGTATTTTGGTAAATGAAGATGGTGATGCATCTCTGGAAGATGTATCGAACTCTGTAGCCCTGGGTACAGCAGATCATGATCTTGCCGTAGACCCAGAGGGATCAAAATCCAGTAATAAAAAGAGAAAAGCTGCTTCAGATAAGAAAACTTTGAGACCAAAGAATTCACAAAAGACTAGTGAATTTGATGCCACACCTAGGGACGACGAATTGGATGATGTCCACTTAAATACTGATCCAGCCGCTCAGAGACCCAAGAGACCAAAGAGAACAAAGAAGAACGTGAATGAAATGTTTGAAGAGACTCTTACCGGGTCAGCTACTAAGGTCCCAGAGCAAACCCAATTTCAACCTCCACGAGATGAGGTTCCAAAATAG 4470 0.4172 MDHRTKPNDSFSYSTLFNLQSLINFELPEQDDDFEYYGNSSQDESRNSRGGAVASHSNGNVLNKRSRSGNSDNEEKSGFHGAHTMEERYRSMLGDHIKKYQRRFKGTTASPDTKQVAVPFAKANNGLKAHKMGSERRRGLLDEETMSEWMNGSNVQKPGNLLDTDFVRQHSSDRVMYEPASVNIGDGVTYKIPPIYDKLAAMVNLPSFSDIHVEDFYLKGTLDLGSLAEMMASDKKFGNRNRAGMGETVSQYESLQARLKDTPVSNSAHKFSLKLSDADLNSSIPEGAAGSIKRSILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPELIEKEEMDKFGKIWVNIVRRDLPRHHRNFTTFHRKQLVDAKRAADNCQREVKMKVSRSLKWTRTASMRSRKLARDMLLFWKRIDKEMLEVRKREEKEAAEALRREQEIREAKRQQQRLNFLIQQTELYSHFMQNKSISSEALSMADENTNDENALINSSAAGRNEEEDPEEAELRREALKAAQEAVSKQKMLTNAFDSEYLRLRQAGESDSLQPEVSGASNIDLKTPSTMPVASTVRTPELFNGCLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKVLPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTSKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGKIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEILRSSVTLSSDVGHEDMHVQSGTFGFTHLMGLSPQEVTFLVTGSFMERLLFSMMRWEQKFSSEVLDFLTETIIDDLECSYLEEGKVRTVTRMLLVPLRSETKFLQNRLPTGLSHAPFEALVVPHQERILSNARLLHSAYTYIPKSRAPPIGAHCSDRNFYYNMIEELHDPWVKRMFVGFARTSDCNGPRKPDGSHHLIQEIDSEQSVCKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKAITVQGRDKQKKKPMKGILVNEDGDASLEDVSNSVALGTADHDLAVDPEGSKSSNKKRKAASDKKTLRPKNSQKTSEFDATPRDDELDDVHLNTDPAAQRPKRPKRTKKNVNEMFEETLTGSATKVPEQTQFQPPRDEVPK 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02298 1489 MobiDBLite consensus disorder prediction 1462 1479 - -
Vifa5g02298 1489 PANTHER HELICASE SRCAP-RELATED 47 513 - -
Vifa5g02298 1489 MobiDBLite consensus disorder prediction 1413 1449 - -
Vifa5g02298 1489 Gene3D - 1116 1382 IPR027417 -
Vifa5g02298 1489 MobiDBLite consensus disorder prediction 1387 1489 - -
Vifa5g02298 1489 SMART helicmild6 1200 1283 IPR001650 -
Vifa5g02298 1489 FunFam Putative DNA helicase INO80 553 831 - -
Vifa5g02298 1489 MobiDBLite consensus disorder prediction 33 83 - -
Vifa5g02298 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 809 IPR027417 -
Vifa5g02298 1489 MobiDBLite consensus disorder prediction 68 83 - -
Vifa5g02298 1489 CDD SF2_C_SNF 1162 1294 - -
Vifa5g02298 1489 Gene3D - 555 833 IPR038718 -
Vifa5g02298 1489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 764 IPR014001 -
Vifa5g02298 1489 Pfam Helicase conserved C-terminal domain 1174 1283 IPR001650 -
Vifa5g02298 1489 FunFam DNA helicase INO80-like protein 1142 1393 - -
Vifa5g02298 1489 Pfam DNA-binding domain 343 471 IPR020838 GO:0003677
Vifa5g02298 1489 SMART ultradead3 577 772 IPR014001 -
Vifa5g02298 1489 MobiDBLite consensus disorder prediction 40 67 - -
Vifa5g02298 1489 Coils Coil 420 459 - -
Vifa5g02298 1489 Pfam SNF2-related domain 596 883 IPR000330 GO:0005524|GO:0140658
Vifa5g02298 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 1339 IPR027417 -
Vifa5g02298 1489 ProSiteProfiles DBINO domain profile. 348 473 IPR020838 GO:0003677
Vifa5g02298 1489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1174 1324 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02298 Vifa-Chr5 756751609 756773401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02298 602 891 RAD5 or RAD16-like Gene Family AT5G43530 28.869 7.23e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g02298 SNF2_N 9.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02298 K11665 - gmx:100780615 2415.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02298 5 756751609 756773401 Vifa5g02298 5 756751609 756773401 ECH