Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g02281 | ATGCCTTTACATACTCCTGATGATATTTTGCAAGATATAGCCATGATTTTTGTATTGGGCTTGCCTTGTACACATCGAGTCGGTCTGACCCAATACCAAAACCAACAAGCATACGGCCTCGCTATTTGTCGTGGAGATGTATCGACCTCACAATGCAAAACTTGTGTTTCAGAAGCAACTAAAGAAATTCTAAATCTTTGTCCATTCAATAAGGGTGCTATTATATGGTACGATAACTGCATGTTCAAGTACTTGGACAATGATTTCTTTGGCAAAATTGATAATTCAAACAAGTTCTCTTTATTGAATGTACAAAATGTTGATGATCCTATCAAATTCAACAACGTTACTAAGGACTTATTGAGCCTACTTGCTTATGAGGCTTCTATGGATAAGAAAATGTATGCGAATGGAGAGTTGAAGATTGGAGAATTAGAGAGAGTTTATGGACAAGCTCAATGCACTAGAGACCTGTCTAGTGTTGATTGTAAGAAGTGTCTTGATGATGCAATTAGTGAAATTCCAAATTGTTGTAATGGAAAAAAAGGAGGAAGAGTTGTTGGTGGAAGTTGTAACGTTAGATATGAAATTTACCCGTTTGTTAGGGAGTAA | 612 | 0.3644 | MPLHTPDDILQDIAMIFVLGLPCTHRVGLTQYQNQQAYGLAICRGDVSTSQCKTCVSEATKEILNLCPFNKGAIIWYDNCMFKYLDNDFFGKIDNSNKFSLLNVQNVDDPIKFNNVTKDLLSLLAYEASMDKKMYANGELKIGELERVYGQAQCTRDLSSVDCKKCLDDAISEIPNCCNGKKGGRVVGGSCNVRYEIYPFVRE | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g02281 | 203 | Gene3D | - | 95 | 200 | IPR038408 | - | |
| Vifa5g02281 | 203 | Gene3D | - | 23 | 89 | IPR038408 | - | |
| Vifa5g02281 | 203 | Pfam | Salt stress response/antifungal | 33 | 84 | IPR002902 | - | |
| Vifa5g02281 | 203 | Pfam | Salt stress response/antifungal | 107 | 197 | IPR002902 | - | |
| Vifa5g02281 | 203 | ProSiteProfiles | Gnk2-homologous domain profile. | 1 | 89 | IPR002902 | - | |
| Vifa5g02281 | 203 | FunFam | Cysteine-rich receptor-like protein kinase 25 | 97 | 200 | - | - | |
| Vifa5g02281 | 203 | PANTHER | CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED | 33 | 202 | - | - | |
| Vifa5g02281 | 203 | ProSiteProfiles | Gnk2-homologous domain profile. | 95 | 200 | IPR002902 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa5g02281 | Vifa-Chr5 | 751393627 | 751395328 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa5g02281 | 43 | 202 | Pollen Coat Proteome | AT4G20670 | 47.904 | 4.27e-46 | 151 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g02281 | - | - | lja:Lj3g3v1353730.1 | 296.204 |