Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02279 ATGATCAATCAAAAATCTGAGAATGAATCTCAGCTTCTGAAATTGGAATCCAAGAAGAAACTAAGGAAAGTTAGATCAATGAAGAAGCTTCAAAGATTGTCAAGCAGAGGAAGAAAACCCCAATATGATCATAGCCTGTCAATTATTTCATCTGCTGGCTCAGAAAGTTCACAGCATCAAACCCCAATTGAAGTCACAGATGCATCACCCAATTATATGAAAGCCACAAGTAGTTCTCATGCAAAGGATAGTTTTCAGATTGTGCAAAGACTTGTGAGAAACAAGACTTTAACAAGAATGACTACTTTGAAACTGAAGAGAAGTTTGACTAAAAAGTTGTCTGGAAAGACTGAACAGAAGAGGAAGTTGAAGTCATCGAGATCGATCAACCTTGCAACTGTCAAGGGATCTAAATCAACAACAGGAGTACATTCTGAATCTATTGATGGAATTGATGGTGAGAATAGGGAAAGCACGAGTGATGCTGGTAGTAAGCCTCAGAGTAAATCGAAGAATTCTTCGGTGGACTCGAGTTTGCATAAAGCTACGTGTTCTTCCGCTATTAAGGATTCCCATTTCCCTGATCGTGTTGAACTCCCACAAGAGGGAAGTGGTTCTCAAGGAGTATCGGCTGTTAGGGTTTGTCCGTATACTTACTGTTCACTTCACGGTCATCGCCATGGTGATTTGCCTCCGTTGAAGCGGTTTGTATCGATGAGGAGACGACAGTTGAAGACGCAAAAGTCTGCAAAAAAGGACGGGAGATCAAAGCAAATTGGTAATGCGAAGAAAGCCACTCAGAAAACCAAAACTGTTCACAATGAAGATGGCAGCTCTCACTTTCAGAATGAGAAGAATGCGGCAAGAGAATTACCTTTTAAGCCTCATGATACTCCACCATCCACAGTTAATGAAGGTGATACTTTAGTCAAAGGCAAAAATATGGAGCCGGATTATGAAGTCTTGGAGAAGAGTTTTGAACAAGATGTTACTACTACTGGCGTGACATATGGAGTGCAGGAAAGAGATCAGAAGTATATAAAGAAGTGGCATTTGATGTATAAGCATGCAGTGTTAAGTAATGCAGGTAAATGTGAAAATAAGCTTCCCTTTGTTGGGAATGAAAAGGAAGGTAGAGAGGAAGATAGCAAAGGAAACAACTCTTCTTATCACAATTGTAGTGAAACAGATTCAGATATGGATGATGAAAAGAAGAATGTAATTGAGCTGGTGCAAAAAGCATTTGATGAAATTCTTCTCCCTGAAGTTGAAGACCTTTCCTCTGACAATCATTTAAAATCTAGAGACAATGAAACTGATGAGCAACTCTTAGAAAAGAGTGAAGGTAAGATTGAAGAAAGGAATACCACAACTTTCGCGGAATCTCCTAAGGAAGTGCAGAAGATGGAGAACAAAACAAAAAGCTGGAGCCGTCTGAAAAGGGTAATCCTCTTGAAAAGGTTTGTAAAGGCACTAGAGAAAGTAAGAAACATCAATTCAAGAAGACCAGGAACATTGCCTTCAGATGCCAACTTCGAAGCGGAAAAAGTTTTTCTTAACCACCAAACAGCAGATGAGAGGGAAAATTCGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTCGCACCTGCTCAAAAACAAAGAGTGACACTTTTGATAGAAGCTTTTGAAACAATTCGGCCAATTCAAGATGCTGAAAATGGACCACAGTCTTCTGCAACAGTGGAGTCTCAGGCAAATCCGATTCGATCACTTGATGCTTCCTCAAGTCATAGCAAGGAAGAAATAAACGACCGAAAGGGTTTTGAGGTAACAAAAAGCGAAAGGATAGACAAGAATACAGCTGCATTTAAGAAAAATGATGAAAGTGCTGTTGTGGAATCAACATCAACAGATGTAGTCAAGTTTACGGATTTCGATATTGGGATATTGGTGGAGGAAGTAACAGCCAAAAGCAAAAATATGGAGTCGGATCACAATGTGCTGCAGAAGAATTTTGTGCAGGAAGAGCCTAAACATGGTAGTAGTATTACTGGTCTTGCACATGGAGTGCAGGAAAGAGATCAGAAATATATAAAAAAGTGGCATTTGATGTATAAGCATGCAGTATTAAGTAACACAAGTAAATGTGAAAATAAGCTTCCCTTTGTTGGAAATGAAAAAGAAGGTAGAGAGGAAGATAATGAAGGAAACAACTCTTCTTGTGACAATTACAGTGAAACAGATTCAGATATGGATAATGAAAAGAAGAATGTAATTGAGCTTGTGCAAAAAGCATTTGATGAAATTCTTCTCCCTGAAGCTGACAGCATCTTTTCTGATGATCATTCAAAATCTAGAAGCTATGGCTCTGAAGAAGTACTCTTAGAAAAGAGTGAAGGTAAAGTAGAAGAAAGGAATGCCACAATTTTCAAAGAATCTCCTAAAGAAGAACAGAAGATGGAGGATAGCAAACCAAAAAGCTGGAGCCATCTGAAAAAGCTAATCCTCTTAAAAAGGTTTGTAAAGGCATTAGAGAAGGCAAGAAACATCAATCCAAGAAGACCAAAACAATCTCCTTCAGATGACAACTTTGAAGCGGAAAATGTTGTTCTTAACCGTCAAACAGCTGAAGAGAGGAGAAAGTCAGAGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGACAAAGAGTGAGGCTTTTAGTAGAAGCTTTTGAAACGGTTCTTCCATTTCAAGATGCTGAAAATAGACTGCAGTCTTCCGCGGGAGTGGAGTCTCAGGAAAATCCAGTTGAATCACTTGACGCTTCCACAAATCATAGCAAGGAACAAGTAAACGAAGGAAGGTTTTCTCTGTACTCTGCTAAGACATTGCTTGGAAAAGTTTCATGTTCTAATGACTGTACTATGGAGTTTTCCGATAACGCTAGTGAAGATCCAATGCACAAACGTTGCAATCCTTTTGAACCAGTGGAACCGGAGGAGGCTCCAACAAATCGAATAGTTGATGAAGTTCCAGAAGATTTGGTTTCAGATTTGAATACAGAAAATACGAGTATCAGATCTGCGTCGCCTGAGAGATATTGTGAAACCAAGAATGTCATCGGTGATAATAGTGAACAATTTTCTTTGACTAAAAGCTTAGTCCTAAATGGTCTTGTGAGATCACTGAAATCTAATTTGGTTGGCCCAGAAACACCGTCGAACCTATTAGATGAACCAACAAGAGACAGAAAATATATGATTGAAAAAGATCAGCCGGGAACATCTAAAGCTCCTATAAGTGCTGTTGTAGAATCTGAGACTCAGGTAGAGAAACAAAGCAACACAGGGCTATGGTTCATGGTGTATAAGCACATGGTATCAGATATAACTGAAAACAATTCTAAGACATTAACTGATGGGCCAGATGAGAAAGAGTCAGAATATGAAGGTAGCATAACAAGAGGACTTTCGGTATCTTATGAAAGTACACCTGTGACTAGTCCAGATATGCACTTCAAGGATCATGTTGTAGCGGATGCCGAAGTTGAACTTCGACAGATTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATACCATCCTTCCAGACAGACAGCCACTCCCCGTCGATAACACAATTGACAGAACTGAAAGAATGTACAGTCAAGGCTTGAACCAAAAAGAAGAAAAGATGGAATCTGGGAACGGAATAGCCAAGCAACAAAAAGAAGAATCAATATCAATGGAGGGAGACAAACCAAAGCAGAAATTGTCTAGGAACTGGAGCAATCTTAAAAAATTTATAATGCTTAGGAGATTCATCAAGGCATTGGAAAAAGTAAGGAAATTTAACCCAAGAGGGCCTCGATATCTACCATTAGAACCTGATTCAGAAGCTGAAAAAGTTGAATTGAGGCGTCAAGATATGGCAGAAAGAAAAGGCACAGAAGAGTGGATGCTTGATTATGCACTTAGACAGGTTGTGTCCAAATTAACTCCAGTTAGGAAGAGAAAAGTGGAGCTGTTAGTTGAAGCTTTCGAGACAGTCGTGCCAACTGCAAAAAACTGA 4071 0.3933 MINQKSENESQLLKLESKKKLRKVRSMKKLQRLSSRGRKPQYDHSLSIISSAGSESSQHQTPIEVTDASPNYMKATSSSHAKDSFQIVQRLVRNKTLTRMTTLKLKRSLTKKLSGKTEQKRKLKSSRSINLATVKGSKSTTGVHSESIDGIDGENRESTSDAGSKPQSKSKNSSVDSSLHKATCSSAIKDSHFPDRVELPQEGSGSQGVSAVRVCPYTYCSLHGHRHGDLPPLKRFVSMRRRQLKTQKSAKKDGRSKQIGNAKKATQKTKTVHNEDGSSHFQNEKNAARELPFKPHDTPPSTVNEGDTLVKGKNMEPDYEVLEKSFEQDVTTTGVTYGVQERDQKYIKKWHLMYKHAVLSNAGKCENKLPFVGNEKEGREEDSKGNNSSYHNCSETDSDMDDEKKNVIELVQKAFDEILLPEVEDLSSDNHLKSRDNETDEQLLEKSEGKIEERNTTTFAESPKEVQKMENKTKSWSRLKRVILLKRFVKALEKVRNINSRRPGTLPSDANFEAEKVFLNHQTADERENSEWMLDYALQKVISKLAPAQKQRVTLLIEAFETIRPIQDAENGPQSSATVESQANPIRSLDASSSHSKEEINDRKGFEVTKSERIDKNTAAFKKNDESAVVESTSTDVVKFTDFDIGILVEEVTAKSKNMESDHNVLQKNFVQEEPKHGSSITGLAHGVQERDQKYIKKWHLMYKHAVLSNTSKCENKLPFVGNEKEGREEDNEGNNSSCDNYSETDSDMDNEKKNVIELVQKAFDEILLPEADSIFSDDHSKSRSYGSEEVLLEKSEGKVEERNATIFKESPKEEQKMEDSKPKSWSHLKKLILLKRFVKALEKARNINPRRPKQSPSDDNFEAENVVLNRQTAEERRKSEEWMLDYALQKVISKLAPAQRQRVRLLVEAFETVLPFQDAENRLQSSAGVESQENPVESLDASTNHSKEQVNEGRFSLYSAKTLLGKVSCSNDCTMEFSDNASEDPMHKRCNPFEPVEPEEAPTNRIVDEVPEDLVSDLNTENTSIRSASPERYCETKNVIGDNSEQFSLTKSLVLNGLVRSLKSNLVGPETPSNLLDEPTRDRKYMIEKDQPGTSKAPISAVVESETQVEKQSNTGLWFMVYKHMVSDITENNSKTLTDGPDEKESEYEGSITRGLSVSYESTPVTSPDMHFKDHVVADAEVELRQIEAIKMVEEAIDTILPDRQPLPVDNTIDRTERMYSQGLNQKEEKMESGNGIAKQQKEESISMEGDKPKQKLSRNWSNLKKFIMLRRFIKALEKVRKFNPRGPRYLPLEPDSEAEKVELRRQDMAERKGTEEWMLDYALRQVVSKLTPVRKRKVELLVEAFETVVPTAKN 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 18 35 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 567 605 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 722 749 - -
Vifa5g02279 1356 Pfam Plant calmodulin-binding domain 813 916 IPR012417 GO:0005516
Vifa5g02279 1356 Pfam Plant calmodulin-binding domain 464 563 IPR012417 GO:0005516
Vifa5g02279 1356 Pfam Plant calmodulin-binding domain 1253 1352 IPR012417 GO:0005516
Vifa5g02279 1356 Coils Coil 649 669 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 242 313 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 1 44 - -
Vifa5g02279 1356 Coils Coil 1225 1245 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 126 146 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 374 401 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 160 181 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 1133 1152 - -
Vifa5g02279 1356 SMART CaM_binding_2 447 565 IPR012417 GO:0005516
Vifa5g02279 1356 SMART CaM_binding_2 1239 1352 IPR012417 GO:0005516
Vifa5g02279 1356 SMART CaM_binding_2 802 916 IPR012417 GO:0005516
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 111 125 - -
Vifa5g02279 1356 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 284 565 IPR044681 GO:0005516
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 268 292 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 1228 1256 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 108 181 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 429 457 - -
Vifa5g02279 1356 MobiDBLite consensus disorder prediction 568 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02279 Vifa-Chr5 750791962 750796301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02279 823 917 Calmodulin-binding Proteins AT5G04020 45.833 1.69e-18 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02279 - - psat:127126396 2294.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02279 5 750791962 750796301 Vifa5g02279 5 750791962 750796301 ECH