Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02247 ATGTCCCTTGAAGACTCTCTAAGATCTCTTTCTCTTGATTACCTAAACCTCCTAATCAACGGACAAGCCTTCAGCGACGTCGTTTTCAGCGTCGAGGGCCGATTAGTCCACGCCCACAGATGCATCTTAGCAGCAAGGAGTCTCTTCTTCAGAAAATTCTTCTGTGGCCCAGACCCACCTTCCGGACTCGACCCGTCCGGCAACCGACTCAACTCAGCAACGAGGTCTGGTGTCATACCGGTTAACTCAGTCGGTTACGAGGTTTTCTTGCTCATGCTTCAGTTTCTCTACAGTGGTCAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGGCCTAACTGCGGCGACCGTGGCTGTTGGCATACGCATTGTACGTCAGCCGTTGATCTCGCTCTTGACACTCTCTCCGCCGCGAGATACTTCGGCGTTGAACAGCTTGCATTGCTCACTCAGAAACAACTTGCAAGCATGGTGGAAAAAACTTCCATTGAAGATGTAATGAAAGTGTTACTTGCATCAAGAAAACAAGACATGCACCAACTATGGACAACATGTTCCCACCTCGTGGCGAAATCAGGTCTTCCGCCGGAGGTGCTAGCGAAACACCTTCCTATAGACATCATTGCAAAAATCGAGGAGCTTCGAATGAAATCATCCCTATCACGCCGCTCCTTAATCCCCCACCACCACCACCCTCACCATCACCACGATCATCTCACCGCAGCAGCAGATCTCGAAGACCAAAAGATCCGTCGGATGAGACGCGCCCTCGACTCCTCAGACGTTGAGCTAGTTAAACTCATGGTAATGGGAGAAGGACTCAACCTCGACGAAGCACTAGCATTACCTTATGCAGTTGAGAGTTGCAGTAGAGAAGTGGTGAAAGCCTTGTTAGAACTCGGTGCAGCTGATGTTAATTTCCCGGCTGGTCCAACCGGTAAAACCCCGCTCCACATTGCGGCCGAAATGGTCTCACCCGACATGGTAGCTGTGCTGCTCGACCACCACGCCGACCCGAATGTAAGAACAGTCGACGGTGTTACACCTTTAGACATTCTCAGAACCCTAACCTCAGACTTTCTCTTCAAAGGAGCTGTCCCTGGATTAACCCACATAGAACCAAACAAACTAAGGCTGTGCTTGGAGCTTGTTCAATCTGCAGCTCTTGTCATGTCAAGAGAAGAAGGAAACAACAACAATGCAAATAACAACAATACAGGCTCTTCAGGAACAAACATGTACAATCACATGAATGAAGAACATCATAGTCATCACAACAACAACAGTAACATGGATTCAAGGTTGGTGTATCTTAACCTTGGTGCTAATACTCAAATGAGTACTTCAAGATTGGATTCTGGTGATGAAGATCATAATAATCAAAGGGAAGCTATGAATCCATCCATGTATCATCATCATCATTCTCATGACTACTAA 1437 0.4725 MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGNRLNSATRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGDRGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLASMVEKTSIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRMKSSLSRRSLIPHHHHPHHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVESCSREVVKALLELGAADVNFPAGPTGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNNANNNNTGSSGTNMYNHMNEEHHSHHNNNSNMDSRLVYLNLGANTQMSTSRLDSGDEDHNNQREAMNPSMYHHHHSHDY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02247 478 SMART ANK_2a 277 307 IPR002110 GO:0005515
Vifa5g02247 478 SMART ANK_2a 312 341 IPR002110 GO:0005515
Vifa5g02247 478 MobiDBLite consensus disorder prediction 395 416 - -
Vifa5g02247 478 CDD BTB_POZ_NPR_plant 8 158 - -
Vifa5g02247 478 MobiDBLite consensus disorder prediction 395 431 - -
Vifa5g02247 478 Pfam Domain of unknown function (DUF3420) 193 254 IPR024228 -
Vifa5g02247 478 MobiDBLite consensus disorder prediction 446 478 - -
Vifa5g02247 478 SUPERFAMILY POZ domain 8 156 IPR011333 -
Vifa5g02247 478 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 474 IPR044284 GO:0099402
Vifa5g02247 478 Pfam BTB/POZ domain 16 106 IPR000210 GO:0005515
Vifa5g02247 478 ProSiteProfiles BTB domain profile. 25 105 IPR000210 GO:0005515
Vifa5g02247 478 FunFam regulatory protein NPR5 isoform X2 243 360 - -
Vifa5g02247 478 SMART BTB_4 25 158 IPR000210 GO:0005515
Vifa5g02247 478 SUPERFAMILY Ankyrin repeat 271 355 IPR036770 -
Vifa5g02247 478 FunFam regulatory protein NPR5 isoform X1 4 191 - -
Vifa5g02247 478 Gene3D Potassium Channel Kv1.1; Chain A 4 191 IPR011333 -
Vifa5g02247 478 ProSiteProfiles Ankyrin repeat region circular profile. 312 342 - -
Vifa5g02247 478 Gene3D - 236 360 IPR036770 -
Vifa5g02247 478 MobiDBLite consensus disorder prediction 451 478 - -
Vifa5g02247 478 Pfam Ankyrin repeats (3 copies) 260 342 IPR002110 GO:0005515
Vifa5g02247 478 ProSiteProfiles Ankyrin repeat profile. 312 344 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02247 Vifa-Chr5 742839818 742842660 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa5g02247 BTB 1.3e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02247 K14508 - gmx:100816086 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02247 5 742839818 742842660 Vifa5g02247 5 742839818 742842660 ECH