Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02238 ATGGGCAGTAGGGGAAGAATTGCTGAGGATACTAACAAGATTGCCAACGGGATGCCGAGTTACGCTCCTCCATTGCCACCGCCTAATTCCTTGGGCATGGAAGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTCGAGGATGCGATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTCTAAGTAAGACATTGCAAATTGCTGGATCTCAGACATTGCAACAACAAAAAGAGTCGCAGTCAAATTTGGCTTCAACATCTGGCGGCCATCGCGAGAACTGGGGAGAGTCCAACATGGGTGATGGAAGCCCTGATACTTCAACAGATGATACAGAAGACAAAAATCAAATGCCTGAAAGGGGAGAATCAAGTGAAAGATCAAAAGATAAATCAGACCAAAAGACGTTAAGACGGTTAGCTCAAAATCGCGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGGATTTTTATTTCAAGCACTGGAGAGCAGACTCATTCGATGAGTGGAAATGGGGCGATGGCGTTCGATGCAGAATATGCACGCTGGTTAGAAGAGCATAATAGGCAAACCAACGAGCTAAGGGCTGCAATAAATTCTCACGCGGGAGATATTGAACTTCGCACCATTGTGGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCCGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAAATTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACCGAGCAACAATTAATGGGCATCTACAACTTGCAACAGTCATCTCAACAGGCTGAAGATGCTCTTTCCCAAGGAATGGATGCTTTGCAGCAATCACTTTCTGAGACTTTGGCTAATGGTTCACCCAACCCATCAGGTTCTTCTGGAAACGTGGCTAACTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTCGAAGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACACTGCAGCAGATGCTTCGGATATTAACAACCAGGCAATCAGCTCGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTACGGGCCTTGAGTTCTCTATGGCTTGCGCGGCCAAGGGAGTAA 1341 0.4594 MGSRGRIAEDTNKIANGMPSYAPPLPPPNSLGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKTLQIAGSQTLQQQKESQSNLASTSGGHRENWGESNMGDGSPDTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02238 446 MobiDBLite consensus disorder prediction 1 37 - -
Vifa5g02238 446 MobiDBLite consensus disorder prediction 99 163 - -
Vifa5g02238 446 SUPERFAMILY Leucine zipper domain 161 204 IPR046347 GO:0003700|GO:0006355
Vifa5g02238 446 Pfam Seed dormancy control 244 319 IPR025422 GO:0006351|GO:0043565
Vifa5g02238 446 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 164 179 IPR004827 GO:0003700|GO:0006355
Vifa5g02238 446 SMART brlzneu 157 220 IPR004827 GO:0003700|GO:0006355
Vifa5g02238 446 FunFam BZIP family transcription factor 160 209 - -
Vifa5g02238 446 Pfam Basic region leucine zipper 157 203 IPR004827 GO:0003700|GO:0006355
Vifa5g02238 446 Gene3D - 160 212 - -
Vifa5g02238 446 MobiDBLite consensus disorder prediction 134 163 - -
Vifa5g02238 446 PANTHER TRANSCRIPTION FACTOR TGA9 109 446 - -
Vifa5g02238 446 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 159 203 IPR004827 GO:0003700|GO:0006355
Vifa5g02238 446 ProSiteProfiles DOG1 domain profile. 226 443 IPR025422 GO:0006351|GO:0043565
Vifa5g02238 446 CDD bZIP_HBP1b-like 161 213 - -
Vifa5g02238 446 Coils Coil 180 207 - -
Vifa5g02238 446 MobiDBLite consensus disorder prediction 99 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02238 Vifa-Chr5 737886178 737889855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02238 126 446 bZIP Transcription Factor Family AT3G12250 73.414 4.52e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g02238 DOG1 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02238 K14431 - gmx:778136 708.368