Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02237 ATGGGCAGTAGGGGAAGAATTGCTGAGGATACTAACAAGATTGCCAACGGGATGCCGAGTTACGCTCCTCCATTGCCACCGCCTAATTCCTTGGGCATGGAAGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTCGAGGATGCGATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTCTAAGTAAGTTACAGTCAATTGTAAACTCGCATATAAACCTCTCTGCTGTAATTGCTGGATCTCAGACATTGCAAATTGCTGGATCTCAGACATTGCAACAACAAAAAGAGTCGCAGTCAAATTTGGCTTCAACATCTGGCGGCCATCGCGAGAACTGGGGAGAGTCCAACATGGGTGATGGAAGCCCTGATACTTCAACAGATGATACAGAAGACAAAAATCAAATGCCTGAAAGGGGAGAATCAAGTGAAAGATCAAAAGATAAATCAGACCAAAAGACGTTAAGACGGTTAGCTCAAAATCGCGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGGATTTTTATTTCAAGCACTGGAGAGCAGACTCATTCGATGAGTGGAAATGGGGCGATGGCGTTCGATGCAGAATATGCACGCTGGTTAGAAGAGCATAATAGGCAAACCAACGAGCTAAGGGCTGCAATAAATTCTCACGCGGGAGATATTGAACTTCGCACCATTGTGGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCCGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAAATTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACCGAGCAACAATTAATGGGCATCTACAACTTGCAACAGTCATCTCAACAGGCTGAAGATGCTCTTTCCCAAGGAATGGATGCTTTGCAGCAATCACTTTCTGAGACTTTGGCTAATGGTTCACCCAACCCATCAGGTTCTTCTGGAAACGTGGCTAACTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTCGAAGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACACTGCAGCAGATGCTTCGGATATTAACAACCAGGCAATCAGCTCGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTACGGGCCTTGAGTTCTCTATGGCTTGCGCGGCCAAGGGAGTAA 1398 0.4564 MGSRGRIAEDTNKIANGMPSYAPPLPPPNSLGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKLQSIVNSHINLSAVIAGSQTLQIAGSQTLQQQKESQSNLASTSGGHRENWGESNMGDGSPDTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02237 465 Pfam Seed dormancy control 263 338 IPR025422 GO:0006351|GO:0043565
Vifa5g02237 465 MobiDBLite consensus disorder prediction 117 182 - -
Vifa5g02237 465 MobiDBLite consensus disorder prediction 1 34 - -
Vifa5g02237 465 SMART brlzneu 176 239 IPR004827 GO:0003700|GO:0006355
Vifa5g02237 465 SUPERFAMILY Leucine zipper domain 180 223 IPR046347 GO:0003700|GO:0006355
Vifa5g02237 465 Coils Coil 465 465 - -
Vifa5g02237 465 Coils Coil 199 226 - -
Vifa5g02237 465 Gene3D - 179 231 - -
Vifa5g02237 465 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 222 IPR004827 GO:0003700|GO:0006355
Vifa5g02237 465 ProSiteProfiles DOG1 domain profile. 245 462 IPR025422 GO:0006351|GO:0043565
Vifa5g02237 465 FunFam BZIP family transcription factor 179 228 - -
Vifa5g02237 465 MobiDBLite consensus disorder prediction 117 151 - -
Vifa5g02237 465 MobiDBLite consensus disorder prediction 153 182 - -
Vifa5g02237 465 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Vifa5g02237 465 PANTHER TRANSCRIPTION FACTOR TGA9 128 465 - -
Vifa5g02237 465 Pfam Basic region leucine zipper 176 222 IPR004827 GO:0003700|GO:0006355
Vifa5g02237 465 CDD bZIP_HBP1b-like 180 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02237 Vifa-Chr5 737886178 737889855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02237 145 465 bZIP Transcription Factor Family AT3G12250 73.414 7.03e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g02237 DOG1 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02237 K14431 - gmx:778136 726.857