Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02236 ATGGGCAGTAGGGGAAGAATTGCTGAGGATACTAACAAGATTGCCAACGGGATGCCGAGTTACGCTCCTCCATTGCCACCGCCTAATTCCTTGGGCATGGAAGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTCGAGGATGCGATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTCTAAGTAAGTCAATTGTAAACTCGCATATAAACCTCTCTGCTGTAATTGCTGGATCTCAGACATTGCAAATTGCTGGATCTCAGACATTGCAACAACAAAAAGAGTCGCAGTCAAATTTGGCTTCAACATCTGGCGGCCATCGCGAGAACTGGGGAGAGTCCAACATGGGTGATGGAAGCCCTGATACTTCAACAGATGATACAGAAGACAAAAATCAAATGCCTGAAAGGGGAGAATCAAGTGAAAGATCAAAAGATAAATCAGACCAAAAGACGTTAAGACGGTTAGCTCAAAATCGCGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGGATTTTTATTTCAAGCACTGGAGAGCAGACTCATTCGATGAGTGGAAATGGGGCGATGGCGTTCGATGCAGAATATGCACGCTGGTTAGAAGAGCATAATAGGCAAACCAACGAGCTAAGGGCTGCAATAAATTCTCACGCGGGAGATATTGAACTTCGCACCATTGTGGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCCGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAAATTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACCGAGCAACAATTAATGGGCATCTACAACTTGCAACAGTCATCTCAACAGGCTGAAGATGCTCTTTCCCAAGGAATGGATGCTTTGCAGCAATCACTTTCTGAGACTTTGGCTAATGGTTCACCCAACCCATCAGGTTCTTCTGGAAACGTGGCTAACTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTCGAAGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACACTGCAGCAGATGCTTCGGATATTAACAACCAGGCAATCAGCTCGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTACGGGCCTTGAGTTCTCTATGGCTTGCGCGGCCAAGGGAGTAA 1392 0.4569 MGSRGRIAEDTNKIANGMPSYAPPLPPPNSLGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKSIVNSHINLSAVIAGSQTLQIAGSQTLQQQKESQSNLASTSGGHRENWGESNMGDGSPDTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02236 463 Coils Coil 197 224 - -
Vifa5g02236 463 Pfam Seed dormancy control 261 336 IPR025422 GO:0006351|GO:0043565
Vifa5g02236 463 Gene3D - 177 229 - -
Vifa5g02236 463 SMART brlzneu 174 237 IPR004827 GO:0003700|GO:0006355
Vifa5g02236 463 MobiDBLite consensus disorder prediction 115 149 - -
Vifa5g02236 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Vifa5g02236 463 ProSiteProfiles DOG1 domain profile. 243 460 IPR025422 GO:0006351|GO:0043565
Vifa5g02236 463 MobiDBLite consensus disorder prediction 151 180 - -
Vifa5g02236 463 MobiDBLite consensus disorder prediction 1 32 - -
Vifa5g02236 463 CDD bZIP_HBP1b-like 178 230 - -
Vifa5g02236 463 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Vifa5g02236 463 PANTHER TRANSCRIPTION FACTOR TGA9 126 463 - -
Vifa5g02236 463 FunFam BZIP family transcription factor 177 226 - -
Vifa5g02236 463 MobiDBLite consensus disorder prediction 115 180 - -
Vifa5g02236 463 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Vifa5g02236 463 Pfam Basic region leucine zipper 174 220 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02236 Vifa-Chr5 737886178 737889855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02236 143 463 bZIP Transcription Factor Family AT3G12250 73.414 4.22e-169 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g02236 DOG1 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02236 K14431 - gmx:778136 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02236 5 737886178 737889855 Vifa5g02236 5 737886178 737889855 ECH