Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02235 ATGGGCAGTAGGGGAAGAATTGCTGAGGATACTAACAAGATTGCCAACGGGATGCCGAGTTACGCTCCTCCATTGCCACCGCCTAATTCCTTGGGCATGGAAGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTCGAGGATGCGATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTCTAAGTAAGACATTGCAACAACAAAAAGAGTCGCAGTCAAATTTGGCTTCAACATCTGGCGGCCATCGCGAGAACTGGGGAGAGTCCAACATGGGTGATGGAAGCCCTGATACTTCAACAGATGATACAGAAGACAAAAATCAAATGCCTGAAAGGGGAGAATCAAGTGAAAGATCAAAAGATAAATCAGACCAAAAGACGTTAAGACGGTTAGCTCAAAATCGCGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGGATTTTTATTTCAAGCACTGGAGAGCAGACTCATTCGATGAGTGGAAATGGGGCGATGGCGTTCGATGCAGAATATGCACGCTGGTTAGAAGAGCATAATAGGCAAACCAACGAGCTAAGGGCTGCAATAAATTCTCACGCGGGAGATATTGAACTTCGCACCATTGTGGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCCGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAAATTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACCGAGCAACAATTAATGGGCATCTACAACTTGCAACAGTCATCTCAACAGGCTGAAGATGCTCTTTCCCAAGGAATGGATGCTTTGCAGCAATCACTTTCTGAGACTTTGGCTAATGGTTCACCCAACCCATCAGGTTCTTCTGGAAACGTGGCTAACTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTCGAAGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACACTGCAGCAGATGCTTCGGATATTAACAACCAGGCAATCAGCTCGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTACGGGCCTTGAGTTCTCTATGGCTTGCGCGGCCAAGGGAGTAA 1317 0.4601 MGSRGRIAEDTNKIANGMPSYAPPLPPPNSLGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKTLQQQKESQSNLASTSGGHRENWGESNMGDGSPDTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02235 438 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 151 195 IPR004827 GO:0003700|GO:0006355
Vifa5g02235 438 Pfam Basic region leucine zipper 149 195 IPR004827 GO:0003700|GO:0006355
Vifa5g02235 438 ProSiteProfiles DOG1 domain profile. 218 435 IPR025422 GO:0006351|GO:0043565
Vifa5g02235 438 SMART brlzneu 149 212 IPR004827 GO:0003700|GO:0006355
Vifa5g02235 438 Pfam Seed dormancy control 236 311 IPR025422 GO:0006351|GO:0043565
Vifa5g02235 438 MobiDBLite consensus disorder prediction 92 124 - -
Vifa5g02235 438 MobiDBLite consensus disorder prediction 1 39 - -
Vifa5g02235 438 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 156 171 IPR004827 GO:0003700|GO:0006355
Vifa5g02235 438 MobiDBLite consensus disorder prediction 126 155 - -
Vifa5g02235 438 CDD bZIP_HBP1b-like 153 205 - -
Vifa5g02235 438 PANTHER TRANSCRIPTION FACTOR TGA9 105 438 - -
Vifa5g02235 438 Coils Coil 172 199 - -
Vifa5g02235 438 FunFam BZIP family transcription factor 152 201 - -
Vifa5g02235 438 SUPERFAMILY Leucine zipper domain 153 196 IPR046347 GO:0003700|GO:0006355
Vifa5g02235 438 MobiDBLite consensus disorder prediction 92 155 - -
Vifa5g02235 438 Gene3D - 152 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02235 Vifa-Chr5 737886178 737889855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02235 118 438 bZIP Transcription Factor Family AT3G12250 73.414 4.10e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g02235 DOG1 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02235 K14431 - gmx:778136 696.812