LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g02235	ATGGGCAGTAGGGGAAGAATTGCTGAGGATACTAACAAGATTGCCAACGGGATGCCGAGTTACGCTCCTCCATTGCCACCGCCTAATTCCTTGGGCATGGAAGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTCGAGGATGCGATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTCTAAGTAAGACATTGCAACAACAAAAAGAGTCGCAGTCAAATTTGGCTTCAACATCTGGCGGCCATCGCGAGAACTGGGGAGAGTCCAACATGGGTGATGGAAGCCCTGATACTTCAACAGATGATACAGAAGACAAAAATCAAATGCCTGAAAGGGGAGAATCAAGTGAAAGATCAAAAGATAAATCAGACCAAAAGACGTTAAGACGGTTAGCTCAAAATCGCGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGGATTTTTATTTCAAGCACTGGAGAGCAGACTCATTCGATGAGTGGAAATGGGGCGATGGCGTTCGATGCAGAATATGCACGCTGGTTAGAAGAGCATAATAGGCAAACCAACGAGCTAAGGGCTGCAATAAATTCTCACGCGGGAGATATTGAACTTCGCACCATTGTGGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCCGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAAATTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACCGAGCAACAATTAATGGGCATCTACAACTTGCAACAGTCATCTCAACAGGCTGAAGATGCTCTTTCCCAAGGAATGGATGCTTTGCAGCAATCACTTTCTGAGACTTTGGCTAATGGTTCACCCAACCCATCAGGTTCTTCTGGAAACGTGGCTAACTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTCGAAGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACACTGCAGCAGATGCTTCGGATATTAACAACCAGGCAATCAGCTCGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTACGGGCCTTGAGTTCTCTATGGCTTGCGCGGCCAAGGGAGTAA	1317	0.4601	MGSRGRIAEDTNKIANGMPSYAPPLPPPNSLGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKTLQQQKESQSNLASTSGGHRENWGESNMGDGSPDTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE	438

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa5g02235	438	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	151	195	IPR004827	GO:0003700\|GO:0006355
Vifa5g02235	438	Pfam	Basic region leucine zipper	149	195	IPR004827	GO:0003700\|GO:0006355
Vifa5g02235	438	ProSiteProfiles	DOG1 domain profile.	218	435	IPR025422	GO:0006351\|GO:0043565
Vifa5g02235	438	SMART	brlzneu	149	212	IPR004827	GO:0003700\|GO:0006355
Vifa5g02235	438	Pfam	Seed dormancy control	236	311	IPR025422	GO:0006351\|GO:0043565
Vifa5g02235	438	MobiDBLite	consensus disorder prediction	92	124	-	-
Vifa5g02235	438	MobiDBLite	consensus disorder prediction	1	39	-	-
Vifa5g02235	438	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	156	171	IPR004827	GO:0003700\|GO:0006355
Vifa5g02235	438	MobiDBLite	consensus disorder prediction	126	155	-	-
Vifa5g02235	438	CDD	bZIP_HBP1b-like	153	205	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g02235	Vifa-Chr5	737886178	737889855	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g02235	118	438	bZIP Transcription Factor Family	AT3G12250	73.414	4.10e-169	476

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vifa5g02235		DOG1	3.4e-30	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g02235	K14431		-	gmx:778136	696.812

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