Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02228 ATGAGTATCACCGTAGCTGCTTGCGGAATCAGAGGGAGTTGCGACGAGCAAAATGCGCCAGAGACGGAGGGATTACGTGGAAGACGACGAGTTAAGGGGGGCAACCGACGGGGTGCAATGGCGATCAGTGGTGTGAGGGAGATGGCAGGCGCCGAAGATGGAAGACGGTCGGCAGGCTTGAGGGCAAGGAGGGAAATTGGTAAAGAACTACATGAGAATTTAGATGGTGGAATAATTTGTAAGATTTGCCATCTGGCATCTGGGCAACCATTAGAAGAAACTTCAATTGGAACTCCATATAAAGCTGATGATAAAACAGGTTTGATTATGCCTGGTTGTGCATGTAAAGATGAGCTAGGAATTGCACATTCCCATTGTGCTAAGTCATGGTTCAAGATTAAAGAAAACAAGTAG 414 0.4686 MSITVAACGIRGSCDEQNAPETEGLRGRRRVKGGNRRGAMAISGVREMAGAEDGRRSAGLRARREIGKELHENLDGGIICKICHLASGQPLEETSIGTPYKADDKTGLIMPGCACKDELGIAHSHCAKSWFKIKENK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02228 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 137 IPR013083 -
Vifa5g02228 137 SMART ringv_2 79 137 IPR011016 GO:0008270
Vifa5g02228 137 ProSiteProfiles Zinc finger RING-CH-type profile. 72 137 IPR011016 GO:0008270
Vifa5g02228 137 Pfam RING-variant domain 103 135 IPR011016 GO:0008270
Vifa5g02228 137 PANTHER ZINC FINGER, RING-CH-TYPE 40 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02228 Vifa-Chr5 737543836 737544837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02228 80 137 C3H Transcription Factor Family AT2G37950 46.552 8.40e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02228 - - gmx:100791129 99.3673