Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02216 ATGACGAAGAAGTTCCCATCATCATCATCATCATCATCATCATCTGCAGAAAACCCTAGCTCCACCTTCCCACTCCATTTCCGGCAGCCACTTTCACTGAAGAAAATGGTGGAGAGAAGAAAGCCTCTGGTTCTATGTTCCACCAAAAATGTCATCAATTCCTTATTGAACTCTTCCACTTCTTCAATCAATGACTTCCCCAACTTGCATTTACCGGTTGGAATTCTCCGATTATCCAACAATTTGCCTTCTCTTGACCACTCCGCACTCATTGCTCTCTCCACTTCTCTTCTCAAAAGACTTTCCATCACTTCCGGTTCACCGGTTTTGATAAAAAATGCTGAAATGAACACGCACAGAATTGCAGTGGCTATTGCTCTTGACCCTCCTAGCAATGACAACGACACCCTTGACATTGATCACTCATTGTCCTCCTCTTCTAGAATAATGCTTGTGTTTCCTTCTTGTGATTTCCCTCTCAACGAGTTGGCGCCACTTGCTCAACCTCCGAGATTTGCTTCCCTTCTGAGGGTTGCTTTTGTGAAGATACCGGAATGTGGCATCCTTGATTCCATTAAACCAACTTCGGATGTTGAAACCAAAGAACGTCAAGACCTGATTGACTTGGCGTTGCAGAAGTATTTTGAAGTTGATAGATATTTGTCGACCGGAGATGTTTTCGGAATTAACATTAGTTGGAACTGTAATTCACTATTTGCATTCCTTGTAACCAAAAAACACAAAAGCAAAATGACAACCGCATTTGTTTTAAGGTCATTGGCTATGGAACCATTAGATGAAACCAAAGGGCTCGTGCCTTTGCAAAGGGACACAGTGAAGATCTTGGCTTCAATACTTGCACCAACTTTGTGTCCATCAGCACTTTCTTCCAAGTTTAGAGTTTCGGTGTTATTATATGGCTTGGCAGGTTGTGGGAAAGGACCGTTGTTAGATATCTCAAGCTTTCAAGACTGCTCAAAGATACTCGCCAACAATACTTCTCTTCGTCATTTTGAGGTGTTTCGAGATTCACATTCACCTGAGATTTCACCAAATGATCAAAGAGGCAATGCATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAACCAGTTGGTGAACATGATGAGAACTCTCTGATGAAATCAAACGGCGAATTTGTGGAGAAGAATGCTGAAAAGACAAGCGGGCATCCGGTCCTGTTGATTGCTGCAGCTGATAGTTCGGAGGGTCTACCTTCAACCATCAGACGCTGCTTTAGCCATGAAACGAAAATGGGGCCTTTGACAGAAGAGCAAAGGGCTGAAATGCTATTGCATTCACTGCAAAATATTTATGGACTCCATTCTAATACTGATTTAGAGGGTATTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCTAGGGATATGTGTGCTTTAATTGCAGATGCTGGTGCCAACTTATTTCCCAGCAGCAATGCTGAAGTAGACAAAGTTGAACCAGAAGTTGCAGATAGTTCTCTTAGTTCAAAGGTGACAGAGGACAAGGAGTCTGAAGTTTCAGCTCGAAAACCTGAGAAAGAAGACTTGGTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCGTCAGCATTGGGTACTCCAAAGGTTCCGAATGTAAAATGGGACGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCTTGCATAAAGATCTATTTGCATCTGGGTTACGCAAGCGGTCTGGTGTTCTTTTGTATGGTCCTCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAGTGTTCCTTAAATTTTCTTAGTGTGAAGGGTCCCGAACTGATCAACATGTACATAGGCGAGTCTGAGAAGAATGTCCGAGACATTTTTCAGAAGGCCAGATCAGCCCGTCCATGTGTCATCTTCTTTGATGAGCTTGACTCTCTTGCACCAGCTCGGGGAGCTTCCGGAGATTCTGGGGGTGTTATGGATAGAGTGGTTTCGCAGATGCTTGCAGAAATCGACGGCTTAAGTGATTCAACACAGGATCTATTTATTATTGGTGCAAGTAATAGACCAGATTTGATAGACCCGGCACTTCTTCGCCCTGGTCGTTTTGATAAATTGCTATATGTTGGCGTTAACTCTGATGCATCTTACAGAGAGCGGGTACTGAAAGCTCTTACGAGAAAGTTCAAACTGCATGAAGATGTTTCACTTTATTCCATTGCAAAAAAATGTCCACCAAACTTCACCGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCGTGCTGCAAAACGCAGGGTTTTGAATGCAGATCCAGAGTCCTCCAACCCAGATAATGAAGCAAATTCTATTGTTGTTGAATACGACGATTTTGTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCAACGGCCGAGCTTAAGAAGTACGAGCTTCTTAGAGATCAGTTTGAAGGCACCTCTAAATGA 2505 0.4295 MTKKFPSSSSSSSSSAENPSSTFPLHFRQPLSLKKMVERRKPLVLCSTKNVINSLLNSSTSSINDFPNLHLPVGILRLSNNLPSLDHSALIALSTSLLKRLSITSGSPVLIKNAEMNTHRIAVAIALDPPSNDNDTLDIDHSLSSSSRIMLVFPSCDFPLNELAPLAQPPRFASLLRVAFVKIPECGILDSIKPTSDVETKERQDLIDLALQKYFEVDRYLSTGDVFGINISWNCNSLFAFLVTKKHKSKMTTAFVLRSLAMEPLDETKGLVPLQRDTVKILASILAPTLCPSALSSKFRVSVLLYGLAGCGKGPLLDISSFQDCSKILANNTSLRHFEVFRDSHSPEISPNDQRGNASEVASVIRKFTEPVGEHDENSLMKSNGEFVEKNAEKTSGHPVLLIAAADSSEGLPSTIRRCFSHETKMGPLTEEQRAEMLLHSLQNIYGLHSNTDLEGIVKEIVGQTSGFMPRDMCALIADAGANLFPSSNAEVDKVEPEVADSSLSSKVTEDKESEVSARKPEKEDLVNALERSKKRNASALGTPKVPNVKWDDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFRAAKRRVLNADPESSNPDNEANSIVVEYDDFVQVLEELQPSLSTAELKKYELLRDQFEGTSK 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02216 834 CDD RecA-like_PEX6_r2 560 719 IPR047533 -
Vifa5g02216 834 ProSitePatterns AAA-protein family signature. 691 709 IPR003960 GO:0005524|GO:0016887
Vifa5g02216 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 487 IPR027417 -
Vifa5g02216 834 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g02216 834 Gene3D - 546 823 IPR027417 -
Vifa5g02216 834 PANTHER AAA-FAMILY ATPASE 80 831 - -
Vifa5g02216 834 FunFam Peroxisomal biogenesis factor 6 546 735 - -
Vifa5g02216 834 FunFam Peroxisome biogenesis protein 6 722 808 - -
Vifa5g02216 834 MobiDBLite consensus disorder prediction 493 525 - -
Vifa5g02216 834 MobiDBLite consensus disorder prediction 494 525 - -
Vifa5g02216 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 828 IPR027417 -
Vifa5g02216 834 SMART AAA_5 584 724 IPR003593 GO:0016887
Vifa5g02216 834 Pfam ATPase family associated with various cellular activities (AAA) 588 720 IPR003959 GO:0005524|GO:0016887
Vifa5g02216 834 Gene3D - 722 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02216 Vifa-Chr5 733878382 733885596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02216 554 793 Calmodulin-binding Proteins AT3G56690 38.589 2.73e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02216 K13339 - gmx:100820183 1102.43