Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02213 ATGGCATCTAGCTCAATGTCAGCATCTAGCTCATGGAGTGTTAAGGACAATAAAGCCTTTGAAAGAGCTCTAGCTGTTTATGATAAAGATGCGCCAGATCGTTGGTACAATGTAGCTCATGCTGTTGGTGGCAAAACTCCGGAGGAAGTAAGGAAACATTATGAACTCCTTGTTGAAGATGTTAAGCGGATTGAGTCGGGCAAAGTTCCGTACCCAAATTACAAGAAAAATTCAGTCTCTCAACAAGAGAAAAGGATGAGGAACCTGAGCCTTCATTGA 279 0.4229 MASSSMSASSSWSVKDNKAFERALAVYDKDAPDRWYNVAHAVGGKTPEEVRKHYELLVEDVKRIESGKVPYPNYKKNSVSQQEKRMRNLSLH 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02213 92 SMART sant 8 60 IPR001005 -
Vifa5g02213 92 CDD SANT 18 58 IPR001005 -
Vifa5g02213 92 FunFam Transcription factor SRM1 4 71 - -
Vifa5g02213 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 86 IPR044636 GO:0003700
Vifa5g02213 92 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Vifa5g02213 92 MobiDBLite consensus disorder prediction 73 92 - -
Vifa5g02213 92 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Vifa5g02213 92 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
Vifa5g02213 92 Gene3D - 2 71 - -
Vifa5g02213 92 MobiDBLite consensus disorder prediction 72 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02213 Vifa-Chr5 733243374 733243731 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa5g02213 Myb_DNA-binding 2.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02213 - - gmx:100818368 153.295