Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02210 ATGGACTCCCAAGATCCTTTTACCCAATCCGAAACCGAAACCTACCTAGCCGGCTTCGTCATGGCCAACATCGTCGGCCTAAAGCACTACTCCGGCACAATAACCGGCCGCGAAATGGTCGGCCTACTCCGGGAGCCTCTCAATCCATACGACTCAAACGCCATCAAAGTTCTCAACACTCAATCCCTCCAAGTCGGCTACATCGAACGCGCCGTCGCCGCCGTTCTCTCGCCGCTCATCGACGCTTCACTCATCCACGTTGAAGCCATCGTGCAAACCAACCCTCGCTCCAATAATACCAGTAGATTTCGTATCCCTTGTCAGGTTCATGTTTTCGCTCATTTCTCCGCTTTTGATGTTGTCCATGACGCTTTTTCTGAGTCACCTGTTCATTTCATTTCGCATTCGGATCCTTCGTTTACTCTGTCCAACGCTGCCGCCGTTAAAGAAACCCGCGCCAACTCCGCCGAATCCACCACCACAAAAACCACCGGTAATAAAAACCTTGACCAAATCTTTAAACTCGTCCGTGAAAACCTAGCTTCCGAAAACAAAATTCACGAACCGTTAAACCCTCCTACTAACATAATCAAATCAGAGCTTCTCCAACACCAAAAAGAAGCGCTAGGATGGCTTTCCCACCGCGAAAACTCCGAGGATTTACCGCAGTTTTGGGAAGAGAAGGAGGGTAGTTTCGTCAATGTGTTGACGAATTACCAAACCAACACTAAACCGGAGCCGCTCCGGGGAGGGATATTCGCGGACGGTATGGGATTAGGGAAGACTTTGACATTGCTTTCGTTGATTGCTTATGATAAAATGAAAATGAAAGGCGGTAAGAAAAGAGGGAGGAGTGTTGTAGAGACAGATGCTACATTGATTGTGTGTCCTCCTTCGGTTATTTCAACTTGGATAACTCAATTGGAAGAGCATACTAACCGTGGTGCATTGAAGGTTTATATGTATTATGGGGATAGAAGGACGCAAGATGCGGATGAATTGCGAAAATATGATGTTGTCTTGACTACTTATAATACTTTGGGAGCTGAATTGCGGTGGCCGGATACCGCGGTAAAGAAATTGGGGTGGAGGAGAATTGTCTTGGATGAAGCGCATATGATTAAGAATGTTAATGCTGGACAGAGTCAGGCTGTTATTGCTTTGAATGCAAAGAGGAGATGGGCTGTTACTGGAACACCTATTCAGAATGGTTCATATGATTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCTTTTTCAATCAAGAGTTATTGGCAAAGCTTGGTTCAACGCCCTCTTAATCAAGGCAAACAAACAGGGCTCAACCGATTGCAGGTTTTGATGGCGGCAATATCATTACGAAGAACAAAAGACACTGCATTGCTGGGGCTTCCACCTAAGATTGTAGAGACTTGTTATGTTGAACTTTCATGTGAAGAGCGTAAACTCTATGATGAGGTTAAAGAGGAAATACGGTCGCTTATGAACAATGACAGACTAGTGTATAGTTATTCTACTATACTAAGTATGATTCTAAGACTCCGTCAGATCTGTGCTGATTTGTCGATGTGCCCTTCGGATTTCAAGTCATGTCTATTTTCTTCAACTGAAATTGAAGATGTTTCGGAGAACCCTGAATTGCTGCAAACATTAATTGGGATGCTACAAGATTGTGAAGATTTTGACTGTCCAATTTGTTTATCTCCCCCATCAGATGTTGTAATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACTGCGCAGCAACTCTAGCTGCCCACTTTGTCGGCGCTCCCTTTCAGAATCTGAACTATTCTCAGTTCCCTCTCTTAAGACTGATACTACGGAATCGTGCAGCACACCAGATGTGAGGTCATCCACCAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAGCTACCAAATCTGTTGTATTTTCACAATTCCGTAAGATGCTTCCATTGTTAGAAGAACCTCTGAAAGCTGCCGGCTTTAAAACATTGCGTCTTGATGGGGCAATGAGTGCTAAACAAAGGACTCAAGTTATTGAACAATTTCAACTCTCAGAAGTTGATGACCCAATGATTCTCCTTGCAAGTCTAAGGGCTTCAAGTACAGGTATAAATCTAACAGCCGCCTCTAGAGTGTACTTAATGGAGCCGTGGTGGAACCCAGCAGTTGAAGAACAGGCAATGGACCGTGTCCACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAGACTGATAGCTAAAAATAGCATAGAAGAGAAAATATTAATGTTGCAAGAGAAGAAGAAAGAAATAACAAGCCGAGGATCTGGGAGGAGATCAAAGGATGTTGTTGGTATGGGCATAGAGGATCTCCGTTATGTTTTAGGAGAATAG 2424 0.4373 MDSQDPFTQSETETYLAGFVMANIVGLKHYSGTITGREMVGLLREPLNPYDSNAIKVLNTQSLQVGYIERAVAAVLSPLIDASLIHVEAIVQTNPRSNNTSRFRIPCQVHVFAHFSAFDVVHDAFSESPVHFISHSDPSFTLSNAAAVKETRANSAESTTTKTTGNKNLDQIFKLVRENLASENKIHEPLNPPTNIIKSELLQHQKEALGWLSHRENSEDLPQFWEEKEGSFVNVLTNYQTNTKPEPLRGGIFADGMGLGKTLTLLSLIAYDKMKMKGGKKRGRSVVETDATLIVCPPSVISTWITQLEEHTNRGALKVYMYYGDRRTQDADELRKYDVVLTTYNTLGAELRWPDTAVKKLGWRRIVLDEAHMIKNVNAGQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGLNRLQVLMAAISLRRTKDTALLGLPPKIVETCYVELSCEERKLYDEVKEEIRSLMNNDRLVYSYSTILSMILRLRQICADLSMCPSDFKSCLFSSTEIEDVSENPELLQTLIGMLQDCEDFDCPICLSPPSDVVITCCAHIFCRECILKTLLRSNSSCPLCRRSLSESELFSVPSLKTDTTESCSTPDVRSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLPLLEEPLKAAGFKTLRLDGAMSAKQRTQVIEQFQLSEVDDPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKEITSRGSGRRSKDVVGMGIEDLRYVLGE 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02210 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 614 IPR013083 -
Vifa5g02210 807 Gene3D - 8 131 - -
Vifa5g02210 807 Pfam Helicase conserved C-terminal domain 635 751 IPR001650 -
Vifa5g02210 807 SMART Ubox_2 561 624 IPR003613 GO:0004842|GO:0016567
Vifa5g02210 807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 242 418 IPR014001 -
Vifa5g02210 807 SMART ring_2 564 602 IPR001841 -
Vifa5g02210 807 SMART ultradead3 197 425 IPR014001 -
Vifa5g02210 807 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 124 804 - -
Vifa5g02210 807 SMART helicmild6 666 751 IPR001650 -
Vifa5g02210 807 Gene3D - 233 457 IPR038718 -
Vifa5g02210 807 Gene3D - 466 801 IPR027417 -
Vifa5g02210 807 Coils Coil 764 784 - -
Vifa5g02210 807 Pfam SNF2-related domain 204 524 IPR000330 GO:0005524|GO:0140658
Vifa5g02210 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 805 IPR027417 -
Vifa5g02210 807 Pfam Ring finger domain 563 603 IPR001841 -
Vifa5g02210 807 SMART HIRAN_2 17 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa5g02210 807 ProSitePatterns Zinc finger RING-type signature. 579 588 IPR017907 -
Vifa5g02210 807 Pfam HIRAN domain 20 109 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa5g02210 807 SUPERFAMILY RING/U-box 554 608 - -
Vifa5g02210 807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 638 802 IPR001650 -
Vifa5g02210 807 CDD SF2_C_SNF 633 762 - -
Vifa5g02210 807 ProSiteProfiles Zinc finger RING-type profile. 564 603 IPR001841 -
Vifa5g02210 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 456 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02210 Vifa-Chr5 732848721 732856656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02210 12 801 RAD5 or RAD16-like Gene Family AT5G05130 59.042 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g02210 SNF2_N 7.1e-77 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02210 K15711 - csin:114305708 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02210 5 732848721 732856656 Vifa5g02210 5 732848721 732856656 ECH