Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02201 ATGTCTGAAAGAATTTTCATCGGAAATGTTGAGGACAAAATCTTAAAACGCAAAATGATTGAAGAATCGAACTCAAAATCGAGGAAGGAATCAAAAAATATAACACTATTCTCTGAAGTTGATTTTGAGAAGGGCAAAAGGGCAGAAGAGAGGGAGGCAAAAGTGCATAAAGAACTCAAGATAATAACACCATCTGCTGAATCTAAAGATCTATTGACTCTAAGATTTGGTAATAATAGCAGGCCAACCACCATTCTATTAGAGAACAGTGAACATTCAGGTTCGTCTCAAAATGTTATTGCTGAAGTTTTACCTGAGCAAGAAGTGAAGAAATTTCCTTGTCTTTTTTGTAACAAGAAGTTTTCAACTTCTCAAGCGTTTGGAGGACACCAAAACGCTCATAAGCATGAACGTCTCTCCAAAAAAATTGAACAAAAAAGAAGGGAGGAAGAAATGGATTCAATCTTAAGGTATAGACCTAGTTTTCCATACCATTATCCTTATTCACGTGCTATTCACTATCAAGGGTATCCTTATTTTTGTGGTAATTTGCAGCAACCAATTGACACTCATATGAATAATACTATGCCTTCTTGGTTTGGTTCTCCATCTGATGGTTATGGAGGGATGTATATGCCAAATACACCTTCCGCACCAACTTCATTTTTGATGTCAATGCCAAAGTCACCCCTCACATCACAACAATTTGGTATGACTAATTTTTTGAGCGAAAATCAAACTCTTCCACTGCCAATTCCTCAAAGGTCAAATACTATGGAATTGGGACTTTTTGTTCAAGCTAATCAAACTCCTTCATTTAGTGAGGATGTGGAAGGAAATTCCAATGCTCGATTTCCTTCCTGTGATCTTCCAATAAAAACTCATGATTTTATTGGAGAAAACCAACTTCTAGTAGAACCCAATGTGTCTTCATCACCAACAAAATCAATATTGGAGGAACTCGACTTGAATCTCAAACTTTAA 984 0.3628 MSERIFIGNVEDKILKRKMIEESNSKSRKESKNITLFSEVDFEKGKRAEEREAKVHKELKIITPSAESKDLLTLRFGNNSRPTTILLENSEHSGSSQNVIAEVLPEQEVKKFPCLFCNKKFSTSQAFGGHQNAHKHERLSKKIEQKRREEEMDSILRYRPSFPYHYPYSRAIHYQGYPYFCGNLQQPIDTHMNNTMPSWFGSPSDGYGGMYMPNTPSAPTSFLMSMPKSPLTSQQFGMTNFLSENQTLPLPIPQRSNTMELGLFVQANQTPSFSEDVEGNSNARFPSCDLPIKTHDFIGENQLLVEPNVSSSPTKSILEELDLNLKL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02201 327 ProSitePatterns Zinc finger C2H2 type domain signature. 114 136 IPR013087 -
Vifa5g02201 327 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 22 327 IPR044246 GO:0009788
Vifa5g02201 327 SUPERFAMILY beta-beta-alpha zinc fingers 107 153 IPR036236 -
Vifa5g02201 327 Gene3D Classic Zinc Finger 89 159 - -
Vifa5g02201 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02201 Vifa-Chr5 731108883 731109866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02201 87 153 C2H2 Transcription Factor Family AT5G27880 44.286 8.75e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02201 - - psat:127130657 380.563