Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02199 ATGGCTTCAAGACCCACTGTTCCTCAACAACAACCCAGAGGTGATGCTGTTGTGGGGGGAGGAAAACAGCAGAAGAAGAACGTTGCAGGAGGGGAAGGAAGGAACCGTCGAGCAGCACTTCATGATATTGGTAATGTGGTCACGGCTGTAAGAGGTGTTGAAGTCAAGCCAAATCGGCCCATAACAAGGAATTTCTGTGCTCAACTACTCGCCAATGCTCAAGCAGCAGCTGCTGCTGATAATAACAAGAAACAGGTCTGTGCTAATGTGGCACCTGGACCCGTTCCTCCTCCTGCCGCTGTTAAGGGAGTTCCAGTGGCTAGAAGAGTCGCAGTGGCCCCTAAACCTGTTCAGAGGAAAGTTACTGCAAAACCAAAGCCTGTGGAACTTATTGATATAATAAGTTCTGAAGAAGAAAATAGCAGCAAAGAAAGGTCTGTGCATAATTCCAGGAAGAAATCATCACGCACTCTTACTTCTGTTCTCACGGCTAGAAGCAAGGCTGCATGTGGTTTGACTAACAAACCAAAGGAGATTGCTGACATTGATGCTGCTGATGTTAACAATGAACTCGCTGCTGTTGAGTATCTTGATGATATTTACAAATTCTACAAGTTAGTTGAGAATGAGAGCCGTCCGCATGATTACATGAACTCACAACCTGAGATTAACGATAAGATGAGAGCTATACTCATTGATTGGCTAGTAGATGTTCACATAAAATTTGAGCTTTCACCTGAAGCCCTTTACCTCACAATCAACATAGTTGATAGATTCTTAGCTATCAGCCTTGTGTCAAGAAGGGAGCTTCAACTGGTTGGCGTCAGTGCTATGTTGATGGCATCGAAGTACGAGGAAATCTGGCCACCTGAGGTTAATGACTTTGTGTGCCTCTCAGATAGAGCTTACACTCATGAACAGATACTCATCATGGAGAAAACCATCCTAGGGAAACTTGAATGGACACTGACAGTGCCTACACCGTTTGTTTTCTTAGTCCGATTTATCAAGGCCGCTTCGGTATCGCTACCTCCTTCAGACCGAGATGTGTTCGAGAACATGGCTCATTTTCTTTCTGAGCTTGGAATGCAGCATTATGCTACCTTGATGTACAGTCCCTCAATGATGGCTGCAGCAGCTGTTTATGCAGCAAGGTGCACATTGAACAAAAGTCCTGCCTGGGATGAAACAGTTAAGGTGCACACTGGTTACTCAGAAGAAGAATTGATGGGTTGTGCTAGATTGTTGGTGAGTTTTCATAGTGGAATTGGGTCTGCAAAGCTGAAGGTTTTGTATAGGAAGTTCTCTGATCCTCAGAGAGGTGCTGTTGCTGTACTTCCACCGGCCAAAAACCTTGTGTCTGCATTAGGTTCTTCTTAG 1380 0.4493 MASRPTVPQQQPRGDAVVGGGKQQKKNVAGGEGRNRRAALHDIGNVVTAVRGVEVKPNRPITRNFCAQLLANAQAAAAADNNKKQVCANVAPGPVPPPAAVKGVPVARRVAVAPKPVQRKVTAKPKPVELIDIISSEEENSSKERSVHNSRKKSSRTLTSVLTARSKAACGLTNKPKEIADIDAADVNNELAAVEYLDDIYKFYKLVENESRPHDYMNSQPEINDKMRAILIDWLVDVHIKFELSPEALYLTINIVDRFLAISLVSRRELQLVGVSAMLMASKYEEIWPPEVNDFVCLSDRAYTHEQILIMEKTILGKLEWTLTVPTPFVFLVRFIKAASVSLPPSDRDVFENMAHFLSELGMQHYATLMYSPSMMAAAAVYAARCTLNKSPAWDETVKVHTGYSEEELMGCARLLVSFHSGIGSAKLKVLYRKFSDPQRGAVAVLPPAKNLVSALGSS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02199 459 SUPERFAMILY Cyclin-like 327 451 IPR036915 -
Vifa5g02199 459 SMART cyclin_7 233 317 IPR013763 -
Vifa5g02199 459 SMART cyclin_7 330 418 IPR013763 -
Vifa5g02199 459 SMART Cyclin_C_2 326 449 IPR004367 -
Vifa5g02199 459 Gene3D - 213 324 - -
Vifa5g02199 459 ProSitePatterns Cyclins signature. 228 259 IPR006671 -
Vifa5g02199 459 Gene3D - 199 444 - -
Vifa5g02199 459 PANTHER CYCLINS 146 434 IPR039361 -
Vifa5g02199 459 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Vifa5g02199 459 MobiDBLite consensus disorder prediction 138 158 - -
Vifa5g02199 459 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Vifa5g02199 459 Pfam Cyclin, C-terminal domain 326 448 IPR004367 -
Vifa5g02199 459 PIRSF Cyclin_A_B_D_E 1 459 IPR046965 GO:0016538|GO:0044772
Vifa5g02199 459 CDD CYCLIN_AtCycB-like_rpt1 179 321 - -
Vifa5g02199 459 MobiDBLite consensus disorder prediction 1 35 - -
Vifa5g02199 459 FunFam G2/mitotic-specific cyclin 212 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02199 Vifa-Chr5 730486162 730488265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02199 1 459 Core Cell Cycle Gene Families AT4G37490 51.178 1.36e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02199 K21777 - gmx:547919 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02199 5 730486162 730488265 Vifa5g02199 5 730486162 730488265 ECH