Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02198 ATGTCTTCAAATTCAAAGCATAACACTAGTAGTAAAAAGAAGCAATCAAAATCACAATCAAGGTTATCATCATCATCTTCAATTTCCGAGCCGGCCACTCCACTCCGCACCATAGCAGAACCACAGAACCTCGCCTCTCTCCGCCAAGAAGCTTCTCGAATCTTCCCATCATTCATTTCAGAATCTACTTTGATAGGCGAAATCACCGATGTCCAGTCCACCGATTCTCTTTCCAAAGGCTCCAAAATTTGGCTTTCCGAGTCTTCTATGGTCGCATCTTCTCTTGCTCCGGGTTCACTTGTTTCGGTGTCTATTCCCTCTTCAAGTAAAGAGATTGCGCAATTGCATAACTTTCCTCTCACGTCATTGACCACTGAATGTGTCAGATACTACGGATTGGAAACTTGTATGACATTGAATCATGTTGCAGGAAACTACTTTGCACTTGCAACTGTATTTCCTTCTAAGAAGGTATTGAAGAGTGGAGTACGCCTGTCTTCTAATCTTTCCGTTGTCATGGGATGTCCTCCTTTGGGCACAAGTGTGCTTGTTCACCCATTACAGAAACAATACACATCTTATATTCCAAATGGAAATGGACTGCATTCTGGAGAAATAGTATATAATTGCAAGGAGTTATATCTTCAGTTGGCTCCTTGTAAGAGTGGACTACCATTAAAAGTCAATAATTTCCTTCCATTAGACTTGTCTAAGTCAAAATCCCGTGCCCAATCTGAGAATGGTAGTGTTGCATCTCCCAAAACACCTTCTTATGGATCAAAGTTTTCTAATGGAGCTGTGTATTCTTCCCCCGTATTTGAAGATTCAGCATCAAGTGTAACAAATTACAACGGTCAATCGGTGACTTCATTTGATGTTAACAAGGCAATAGGAGATGAAAGTTCCAAAAAATTACTAGAAACATGTGCGACTTCATGGTTATACTCTCGTTGTTTATTGCTAGGGAATCTTGTTAGTGTCCCAATGTTTTCTGAGTTTTGCATTTTCCAAGTGATGGGAATTAAAAAGGTGCCAGCTACCACACCTGACTATTGTTCATTGAATGGGAGCAGTAATTTAAATCTTGAGGATTCTGATTTAGTAGAGAACGGAAATCTGGCTTTCACTGTCAATTGGGAAACAAAGGTATTTTTATCTTTGCCATCAAATGAAGCATTTGAAGAGTCAGTTCTAAGGGATTTATCGTGTCTGAAACTTGATCACAAGGCTGTTAAACCTAGCATACATGATAATATTTCTAAATTAGGTGGTTTATCTAAAGAAGAAATGCTTTTAAAGGAAACAATTTCTTTTTTAGGGAACAATACTTTATCAAGATTTGGTATGCATAATACTAAAGGAGTCCTTCTTCATGGCCCACCTGGTACAGGAAAGACTTCTCTGGCTCAATTATGTGCTCATGATGCTGGGGTCAGATTTTTCTCAATCAATGGACCCGAAATTGTTACCTCGAATTACGGGGAAAGTGAGAAAGCATTGCAAGACGTTTTTGATTCAGCTATTCAAGCTGCACCTGCCGTGGTATTTATAGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGTGGTGATGAGCTATCTAACAGATTGGTGGGAACCTTATTGCTTCTGATGGATGGAATTAGAAGAAATGAAGGATTACTTGTAATTGCTGCTACTAATAGGCTTGACCATATTGATCCAGCTCTCAGACGACCTGGAAGATTTGGCATGGAAATTGAAATCGGTGTGCCATCACAAATGCAGCGAAAAGATATTTTGCGCACTATTCTCTGTGAAATAGATCACTCTCTTTCAGAGACACAAATTGAAGAGCTTGCCTCAATAACTCATGGATTTGTAGGGGCTGATTTAGTCGGCCTTCGTGATTGGGCAACTTTTATTTGTCTTCGGCGCTATTTTGAACTTAAACATAAAGAGACTTGCAATTATAGTTCTGATGACATAGTAGAGCAACCCACTCCGTTGAGTAGTGCAACAAACTCCAAAGACCATTCAAGTATTGGAACTTCTGAAATTATCGATAAGACGCCCGAAGAAGAGCCTATTTTGAATGTGACTTTTGAGGATTTTCAGAAGGCTAGGTCTGAAATAAGACCTAGTGCCATGAGAGAGGTGACCCTTGAAGTTCCAAAGGTTAATTGGGAAGATGTTGGTGGCCAGAAGGAGGTCAAAAATCAAGTGTTGGAAGCAGTATTATGGCCGCAAAAGCACCACGATGCATTCACCCGTATTGGGACTGATCCTCCAACAGCTATATTGCTGTTTGGGCCTCCAGGTTGTAGCAAAACCCTAATGGCACGAGCAGTTGCTTCTGAAGCCGGGCTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAAATCAATTTTTGAGAAAGCAAGGGCCAATGCCCCGTCAATTGTCTTTTTTGATGAAATAGATAGTCTTGCTGTAACCCGTGGGAAAGATGGTGAGAGTGTTTCAGTGTCTGATAGAGTCATGGCTCAACTTCTTGTTCAATTGGATGGGGTGCGTAAAAGAGGTGATGTTACTGTCATAGCCGCTACAAATAGGCCAGACAAGATTGACCCTGCTCTTTTAAGACAAGGACGCTTTGATCGTCTGCTATATGTTGGACCTCCAAATGAGATTGACAGAGAAGAGATATTTAGCATTCATTTGCGCAAAACTCCACATGATTATGATGTTAGCATGAAAGAACTTGCTCAACTGACGGATGGTTTTACTGGGGCTGATATATCACTTATATGCCGAGAAGCAGCTCTTGCTGCATTGGAGGAGAGCTTTGATGCTTCCGTTGTAAAAATGAAGCACTTTAAGATAGCAATCGAACAGGTTCAGCCAACAGAAGTTCAGTCCTACCAAAAGCTATCGGAAAAATTTCAAAGGGCTGTGTTCTCCTGTGATATAAATGGTTAA 2979 0.4089 MSSNSKHNTSSKKKQSKSQSRLSSSSSISEPATPLRTIAEPQNLASLRQEASRIFPSFISESTLIGEITDVQSTDSLSKGSKIWLSESSMVASSLAPGSLVSVSIPSSSKEIAQLHNFPLTSLTTECVRYYGLETCMTLNHVAGNYFALATVFPSKKVLKSGVRLSSNLSVVMGCPPLGTSVLVHPLQKQYTSYIPNGNGLHSGEIVYNCKELYLQLAPCKSGLPLKVNNFLPLDLSKSKSRAQSENGSVASPKTPSYGSKFSNGAVYSSPVFEDSASSVTNYNGQSVTSFDVNKAIGDESSKKLLETCATSWLYSRCLLLGNLVSVPMFSEFCIFQVMGIKKVPATTPDYCSLNGSSNLNLEDSDLVENGNLAFTVNWETKVFLSLPSNEAFEESVLRDLSCLKLDHKAVKPSIHDNISKLGGLSKEEMLLKETISFLGNNTLSRFGMHNTKGVLLHGPPGTGKTSLAQLCAHDAGVRFFSINGPEIVTSNYGESEKALQDVFDSAIQAAPAVVFIDEIDAIAPPRKDGGDELSNRLVGTLLLLMDGIRRNEGLLVIAATNRLDHIDPALRRPGRFGMEIEIGVPSQMQRKDILRTILCEIDHSLSETQIEELASITHGFVGADLVGLRDWATFICLRRYFELKHKETCNYSSDDIVEQPTPLSSATNSKDHSSIGTSEIIDKTPEEEPILNVTFEDFQKARSEIRPSAMREVTLEVPKVNWEDVGGQKEVKNQVLEAVLWPQKHHDAFTRIGTDPPTAILLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSIFEKARANAPSIVFFDEIDSLAVTRGKDGESVSVSDRVMAQLLVQLDGVRKRGDVTVIAATNRPDKIDPALLRQGRFDRLLYVGPPNEIDREEIFSIHLRKTPHDYDVSMKELAQLTDGFTGADISLICREAALAALEESFDASVVKMKHFKIAIEQVQPTEVQSYQKLSEKFQRAVFSCDING 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02198 992 PANTHER AAA-FAMILY ATPASE 86 982 - -
Vifa5g02198 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 975 IPR027417 -
Vifa5g02198 992 ProSitePatterns AAA-protein family signature. 863 881 IPR003960 GO:0005524|GO:0016887
Vifa5g02198 992 Gene3D - 405 584 IPR027417 -
Vifa5g02198 992 Gene3D - 894 964 - -
Vifa5g02198 992 Pfam ATPase family associated with various cellular activities (AAA) 761 892 IPR003959 GO:0005524|GO:0016887
Vifa5g02198 992 Pfam ATPase family associated with various cellular activities (AAA) 455 584 IPR003959 GO:0005524|GO:0016887
Vifa5g02198 992 MobiDBLite consensus disorder prediction 1 33 - -
Vifa5g02198 992 FunFam calmodulin-interacting protein 111 isoform X1 718 893 - -
Vifa5g02198 992 CDD RecA-like_CDC48_r2-like 732 891 - -
Vifa5g02198 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 712 IPR027417 -
Vifa5g02198 992 Gene3D - 586 708 - -
Vifa5g02198 992 Gene3D - 718 969 IPR027417 -
Vifa5g02198 992 FunFam Putative vesicular transport protein (CDC48) 406 584 - -
Vifa5g02198 992 ProSitePatterns AAA-protein family signature. 555 573 IPR003960 GO:0005524|GO:0016887
Vifa5g02198 992 SMART AAA_5 757 895 IPR003593 GO:0016887
Vifa5g02198 992 SMART AAA_5 451 587 IPR003593 GO:0016887
Vifa5g02198 992 MobiDBLite consensus disorder prediction 1 35 - -
Vifa5g02198 992 FunFam spermatogenesis-associated protein 5-like protein 1 894 977 - -
Vifa5g02198 992 Pfam AAA+ lid domain 915 960 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02198 Vifa-Chr5 730474123 730480891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02198 11 987 Calmodulin-binding Proteins AT3G56690 52.229 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02198 - - psat:127126471 1783.84