Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02197 ATGTCTTCAAATTCAAAGAAGCAATCAAAATCACAATCAAGGTTATCATCATCATCTTCAATTTCCGAGCCGGCCACTCCACTCCGCACCATAGCAGAACCACAGAACCTCGCCTCTCTCCGCCAAGAAGCTTCTCGAATCTTCCCATCATTCATTTCAGAATCTACTTTGATAGGCGAAATCACCGATGTCCAGTCCACCGATTCTCTTTCCAAAGGCTCCAAAATTTGGCTTTCGAGTCTTCTATGGTCGCATCTTCTCTTGCTCCGGGTTCACTTGTTTCGGTGTCTATTCCCTCTTCAAGTAAAGAGATTGCGCAATTGCATAACTTTCCTCTCACGTCAGTTGACCACTGAATGTGTCAGATACTACGGATTGGAAACTTGCATGACATTGAATCATGTTGCAGGAAACTACTTTGCTCTTGCAACTGTATTTCCTTCTAAGAAGGTATTGAAGAGTGGAGTACGCCTGTCTTCTAATCTTTCCGTTGTCATGGGATGTCCTCCTTTGGGCACAAGTGTGCTTGTTCACCCATTACAGAAACAATACACATCTTATATTCCAAATGGAAATGGACTGCATTCTGGAGAAATAGTATATAATTGCAAGGAGTTATATCTTCAGTTGGCTCCTTGTAAGAGTGGACTACCATTAAAAGTCAATAATTTCCTTCCATTAGACTTGTCTAAGTCAAAATCCCGTGCCCAATCTGAGAATGGTAGTGTTGCATCTCCTAAAACACCTTCTTATGGATCAAAGTTTTCTAATGGAGCTGTGTATTCTTCCCCCGTATTTGAAGATTCAGCATCAGGTGTAACAAATTACAACGGTCAATCGGTGACTTCATTTGATGTTAACAAGGCAATAGGAGATGAAAGTTCCAAAAAATTACTAGAAACATGTGCGACTTCATGGTTATACTCTCGTTGTTTATTGCTAGGGAATCTTGTTAGTGTCCCAATGTTTTCTGAGTTTTGCATTTTCCAAGTGATTGGAATTAAAAAGGTGCCAGCTACCACACCTGACTATTGTTCATTGAATGGGAGCAGTAATTTAAATCTTGAGGATTCTGATTTAGTAGAGAACGGAAATCTGGCTTTCACTGTCAATTGGGAAACAAAGGTATTTTTATCTTTGCCATCAAATGAAGCATTTGAAGAGTCAGTTCTAAGGGATTTATCGTGTCTGAAACTTGATCACAAGGCTGTTAAACCTAGCATACATGATAATATTTCTAAATTAGGTGGTTTATCTAAAGAAGAAATGCTTTTAAAGGAAACAATTTCTTTTTTAGGGAACAATACTTTATCAAGATTTGGTATGCATAATACTAAAGGAGTCCTTCTTCATGGCCCACCTGGTACAGGAAAGACTTCTCTGGCTCAATTATGTGCTCATGATGCTGGGGTCAGATTTTTCTCAATCAATGGACCCGAAATTGTTACCTCGAATTACGGGGAAAGTGAGAAAGCATTGCAAGACGTTTTTGATTCAGCTATTCAAGCTGCACCTGCCGTGGTATTTATAGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGTGGTGATGAGCTATCTAACAGATTGGTGGGAACCTTATTGCTTCTGATGGATGGAATTAGAAGAAATGAAGGATTACTTGTAATTGCTGCTACTAATAGGCTTGACCATATTGATCCAGCTCTCAGACGACCTGGAAGATTTGGCATGGAAATTGAAATCGGTGTGCCATCACAAATGCAGCGAAAAGATATTTTGCGCACTATTCTCTGTGAAATAGATCACTCTCTTTCAGAGACACAAATTGAAGAGCTTGCCTCAATAACTCATGGATTTGTAGGGGCTGATTTAGTCGGCCTTCGTGATTGGGCAACTTTTATTTGTCTTCGGCGCTATTTTGAACTTAAACATAAAGAGACTTGCAATTATAGTTCTGATGACATAGTAGAGCAACCCACTCCGTTGAGTAGTGCAACAAACTCCAAAGACCATTCAAGTATTGGAACTTCTGAAATTATCGATAAGACGCCCGAAGAAGAGCCTATTTTGAATGTGACTTTTGAGGATTTTCAGAAGGCTAGGTCTGAAATAAGACCTAGTGCCATGAGAGAGGTGACCCTTGAAGTTCCAAAGGTTAATTGGGAAGATGTTGGTGGCCAGAAGGAGGTCAAAAATCAAGTGTTGGAAGCAGTATTATGGCCGCAAAAGCACCACGATGCATTCACCCGTATTGGGACTGATCCTCCAACAGCTATATTGCTGTTTGGGCCTCCAGGTTGTAGCAAAACCCTAATGGCACGAGCAGTTGCTTCTGAAGCCGGGCTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAAATCAATTTTTGAGAAAGCAAGGGCCAATGCCCCGTCAATTGTCTTTTTTGATGAAATAGATAGTCTTGCTATAACCCGTGGGAAAGATGGTGAGAGTGTTTCAGTGTCTGATAGAGTCATGGCTCAACTTCTTGTTCAATTGGATGGGGTGCGTAAAAGAGGTGATGTTACTGTCATAGCCGCTACAAATAGGCCAGACAAGATTGACCCTGCTCTTTTAAGACAAGGACGCTTTGATCGTCTGCTATATGTTGGACCTCCAAATGAGATTGACAGAGAAGAGATATTTAGCATTCATTTGCGCAAAACTCCACATGATTATGATGTTAGCATGAAAGAACTTGCTCAACTGACGGATGGTTTTACTGGGGCTGATATATCACTTATATGCCGAGAAGCAGCTCTTGCTGCATTGGAGGAGAGCTTTGATGCTTCCGTTGTAAAAATGAAGCACTTTAAGATAGCAATCGAACAGGTTCAGCCAACAGAAGTTCAGTCCTACCAAAAGCTATCGGAAAAATTTCAAAGGGCTGTGTTCTCCTGTGATATAAATGGTTAA 2958 0.4094 MSSNSKKQSKSQSRLSSSSSISEPATPLRTIAEPQNLASLRQEASRIFPSFISESTLIGEITDVQSTDSLSKGSKIWLSSLLWSHLLLLRVHLFRCLFPLQVKRLRNCITFLSRQLTTECVRYYGLETCMTLNHVAGNYFALATVFPSKKVLKSGVRLSSNLSVVMGCPPLGTSVLVHPLQKQYTSYIPNGNGLHSGEIVYNCKELYLQLAPCKSGLPLKVNNFLPLDLSKSKSRAQSENGSVASPKTPSYGSKFSNGAVYSSPVFEDSASGVTNYNGQSVTSFDVNKAIGDESSKKLLETCATSWLYSRCLLLGNLVSVPMFSEFCIFQVIGIKKVPATTPDYCSLNGSSNLNLEDSDLVENGNLAFTVNWETKVFLSLPSNEAFEESVLRDLSCLKLDHKAVKPSIHDNISKLGGLSKEEMLLKETISFLGNNTLSRFGMHNTKGVLLHGPPGTGKTSLAQLCAHDAGVRFFSINGPEIVTSNYGESEKALQDVFDSAIQAAPAVVFIDEIDAIAPPRKDGGDELSNRLVGTLLLLMDGIRRNEGLLVIAATNRLDHIDPALRRPGRFGMEIEIGVPSQMQRKDILRTILCEIDHSLSETQIEELASITHGFVGADLVGLRDWATFICLRRYFELKHKETCNYSSDDIVEQPTPLSSATNSKDHSSIGTSEIIDKTPEEEPILNVTFEDFQKARSEIRPSAMREVTLEVPKVNWEDVGGQKEVKNQVLEAVLWPQKHHDAFTRIGTDPPTAILLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSIFEKARANAPSIVFFDEIDSLAITRGKDGESVSVSDRVMAQLLVQLDGVRKRGDVTVIAATNRPDKIDPALLRQGRFDRLLYVGPPNEIDREEIFSIHLRKTPHDYDVSMKELAQLTDGFTGADISLICREAALAALEESFDASVVKMKHFKIAIEQVQPTEVQSYQKLSEKFQRAVFSCDING 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02197 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 968 IPR027417 -
Vifa5g02197 985 Gene3D - 711 962 IPR027417 -
Vifa5g02197 985 FunFam spermatogenesis-associated protein 5-like protein 1 887 970 - -
Vifa5g02197 985 Pfam ATPase family associated with various cellular activities (AAA) 448 577 IPR003959 GO:0005524|GO:0016887
Vifa5g02197 985 Pfam ATPase family associated with various cellular activities (AAA) 754 885 IPR003959 GO:0005524|GO:0016887
Vifa5g02197 985 ProSitePatterns AAA-protein family signature. 548 566 IPR003960 GO:0005524|GO:0016887
Vifa5g02197 985 Gene3D - 579 701 - -
Vifa5g02197 985 Gene3D - 887 957 - -
Vifa5g02197 985 Pfam AAA+ lid domain 908 953 IPR041569 -
Vifa5g02197 985 FunFam calmodulin-interacting protein 111 isoform X1 711 886 - -
Vifa5g02197 985 Gene3D - 398 577 IPR027417 -
Vifa5g02197 985 ProSitePatterns AAA-protein family signature. 856 874 IPR003960 GO:0005524|GO:0016887
Vifa5g02197 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 705 IPR027417 -
Vifa5g02197 985 FunFam Putative vesicular transport protein (CDC48) 399 577 - -
Vifa5g02197 985 MobiDBLite consensus disorder prediction 1 25 - -
Vifa5g02197 985 PANTHER AAA-FAMILY ATPASE 571 975 - -
Vifa5g02197 985 SMART AAA_5 444 580 IPR003593 GO:0016887
Vifa5g02197 985 SMART AAA_5 750 888 IPR003593 GO:0016887
Vifa5g02197 985 CDD RecA-like_CDC48_r2-like 725 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02197 Vifa-Chr5 730296637 730303379 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02197 6 980 Calmodulin-binding Proteins AT3G56690 50.384 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02197 - - psat:127126471 1699.49