Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02194 ATGAGAGAAGACGAATCAAATTGGTTTTCCCGATGGGAAGAACAACTACCTCCGCCTGAAGAACTGATGCCGTTATCACAAACCCTAATCACTCCTGATCTAGCTATTGCTTTCGATATCAGAAACCCTCACACCACTAACACAAACACTAACAACGCTAATCCGCAACACCAACAGTCTCATCAAAATCAACATCAACAGCACCAACATCAACCTTCTTCTCTTCCTTCCTCCACCGAGTTTGCCGATTCCGGCGAACTCGGTTCCGGAACAGCCGGGGAAGAGCCGGCCAGAACACTCAAAAGACCGCGACTCGTTTGGACACCGCAACTCCATAAACGTTTTGTTGACGCCGTGGCACACCTCGGAATAAAAAACGCTGTTCCGAAGACGATAATGCAGCTTATGAGTGTTGATGGTTTAACCAGAGAAAACGTCGCCAGTCACTTGCAGAAATATCGCCTTTATCTTAAACGCATGCAGGGGATTTCTTCTGCTGGTGGCGGTGGTTCCGGTGCGGGTTCTGTTGGTGTCAATGACCCTGCCACGGATCATCTATTTGCTAGTTCGCCTGTGCCGCCGCATTTTCTTCATCCCGTTGCTCGCCCGAATTCCGATCATTTTATGCCTTTTGTTCCTGTACCTGCCATTCACCATCAGCAACAACTGGCTGCTGCTGCTGCTGCTCAGTATCACCGCCCGGTCGGTCATTTCGGGTCCCCCCCGAATGGTCACTTTGACAATCCATTCTTGTCTAGACAGCATCAGCAACAGCATCAACATCAACAGCACCACCACCAGCAACTTCATAGGATTGGGGCTCAAATGCATCATAACCCTGTTGCTGGTTATGTGGAAGATATGGAATCGGCCAATGCGTCGGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACTGGAGATGATTGA 927 0.4919 MREDESNWFSRWEEQLPPPEELMPLSQTLITPDLAIAFDIRNPHTTNTNTNNANPQHQQSHQNQHQQHQHQPSSLPSSTEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSAGGGGSGAGSVGVNDPATDHLFASSPVPPHFLHPVARPNSDHFMPFVPVPAIHHQQQLAAAAAAQYHRPVGHFGSPPNGHFDNPFLSRQHQQQHQHQQHHHQQLHRIGAQMHHNPVAGYVEDMESANASGGRKVLTLFPTGDD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02194 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Vifa5g02194 308 MobiDBLite consensus disorder prediction 42 85 - -
Vifa5g02194 308 MobiDBLite consensus disorder prediction 42 101 - -
Vifa5g02194 308 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g02194 308 Gene3D - 99 161 - -
Vifa5g02194 308 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 288 IPR044841 GO:0003700|GO:0006355
Vifa5g02194 308 MobiDBLite consensus disorder prediction 246 271 - -
Vifa5g02194 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Vifa5g02194 308 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Vifa5g02194 308 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Vifa5g02194 308 FunFam Two-component response regulator 98 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02194 Vifa-Chr5 728524129 728525055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02194 1 308 G2-like Transcription Factor Family AT3G10760 58.309 3.73e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g02194 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02194 - - ccaj:109802866 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02194 5 728524129 728525055 Vifa5g02194 5 728524129 728525055 ECH