Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02191 ATGCGCGACACGTGGCAAAATAAACTTCAACGGTTGAGATTCGGCTTTGCTCCATTTAGGTTTCTTCCCTCTTCTCTCATCACTCCCTCACCGCTTTCTCCATCTTCCACTCAGTCGCCGCCGCCGCCACTTTCCGTCGTTTCCCGCGGCGGATTTGTCTCTGCAAAACCATTCCACTCTGCTCCTTTTTTCATATCTTCGATTTCATTACCGCCGCGCCGCCTTCTCCCGTCACTCCATCCGACTAGTCTCTCACTAACCGCCTTTGCTACCATTGCTACAATGCCTGGCGAAATTAAAAGCATGAGCACGAGACAACGGAGAGCCGAGGAAGTGATTGGTGGCAATGCCGAAGCTATTCAAACCCTAAGAGATCTCATTACATTTCCTTGGCGTCTATTACCTTGTGATGCAAAGAGACTTGGGATTAAATTTGGAAGAGGTGTTTTGTTACATGGTTCACCTGGCACTGGAAAGACGAGTTTGGTACGGGCAGTTGTTGAAGAATGTGGGGCAATTTTGACGATTATAAGCCCGAACACCATTCATAGCGCACATGTTGGTGAAAGTGAGAGAAATCTTCGCGAGGCTTTTTCAGAGGCATCTTCTCATGCAGCGTCGGGCAAGTCATCTGTCATCTTCATAGATGAAATAGATGTACTTTGTCCTCGACGAGATTCCAGGAGGCTTATTGCTTCCCAACTTCGTTTTTTGATGGACTCAAACAAAGCAACCTCTTCTACGCCAGGGGTAGTTGTGGTTGCATCGACTAACAGGGTGGATGCAATTGACCCTGCCCTAAGAAGGAATGGGCGTTTTGATATTGAAATTGAAGTTTCAGTCCCAAATGAAAAGGAGCGCCTTCAAATTCTAGAGCTGTATACAAAGAAGATCCCTCGGGATTCACGCGACTTAGAATTCATTGCCGCATCATGCAACGGCTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTAAAGCTATCGAATCTGCCATTAAAAGGTCCAAAAATGCAAATAAAGATGTTAATGATTCCATGTTAACGATGAAAGATTGGAAGAATGCAAGGTCTCTTGTTCAACCAAGTATAACAAGAGGCATTACTGTGGAAGTTCCAAAAGTGACTTGGAAAGATATTGGGGGGTTGAAAGACGTGAAGACAAAGCTCGAGAAAGCTATTGAGTGGCCTATAAAATATCCTGAAGCATTTTCAAGACTTGGAATAACCCCTGTTCGTGGAATTCTTCTCCACGGGCCTCCAGGATGTTCCAAAACTACTCTTGCTAAAGCTGCTGCAAATGCTGCTAATGTTCCATTCTTTTCCTTGAGTGGTGCAGAATTATTTTCAATGTATGTCGGAGAAGGAGAAAGTTTGCTCCGTGAAATATTTCGCAAAGCACGTATTGCCGGAAAAAGTATAATATTTTTTGATGAAGCTGACGTAGTAGCTGGCAAACGGGGTGATAGTTCGAGTGGTAGTGCTGCAGTTGGAGAGAGGCTTTTATCGACTCTGCTTACTGAAATGGATGGTTTAGAAGAAGCTAAAGGAGTCCTTGTTTTAGCAGCCACAAATCGCCCTTATGCAATTGATGCTGCACTTATGCGTCCCGGACGATTTGATCAGATTTTGTATGTGCCACCACCTGATTTGGAGGGTCGAATTGAGATACTTAATGTACACACACGAAGGATGCAATTAGGGAGTGATGTTGATCTCAGAAGACTAGCAGAAGATACTGAGTTCTTCACAGGGGCTGAACTAGAGGGATTATGTAAAGAAGTTGGAATAGTAGCTCTAAGGGAAAACATGGACGCCACTGTTGTTTTTGACCGTCATTTTCAGATTGTGAAGAATTCTTTAAAACCAGCATTAACAGTCGATGTTATTGATTCATACTCGTCTTTTAGAAGAACCTCTTCTCGAGTTTTGCCTAAGATTGACCAAGAACATAGAGATGGTTGA 1962 0.4399 MRDTWQNKLQRLRFGFAPFRFLPSSLITPSPLSPSSTQSPPPPLSVVSRGGFVSAKPFHSAPFFISSISLPPRRLLPSLHPTSLSLTAFATIATMPGEIKSMSTRQRRAEEVIGGNAEAIQTLRDLITFPWRLLPCDAKRLGIKFGRGVLLHGSPGTGKTSLVRAVVEECGAILTIISPNTIHSAHVGESERNLREAFSEASSHAASGKSSVIFIDEIDVLCPRRDSRRLIASQLRFLMDSNKATSSTPGVVVVASTNRVDAIDPALRRNGRFDIEIEVSVPNEKERLQILELYTKKIPRDSRDLEFIAASCNGYVGADLEALCRKAIESAIKRSKNANKDVNDSMLTMKDWKNARSLVQPSITRGITVEVPKVTWKDIGGLKDVKTKLEKAIEWPIKYPEAFSRLGITPVRGILLHGPPGCSKTTLAKAAANAANVPFFSLSGAELFSMYVGEGESLLREIFRKARIAGKSIIFFDEADVVAGKRGDSSSGSAAVGERLLSTLLTEMDGLEEAKGVLVLAATNRPYAIDAALMRPGRFDQILYVPPPDLEGRIEILNVHTRRMQLGSDVDLRRLAEDTEFFTGAELEGLCKEVGIVALRENMDATVVFDRHFQIVKNSLKPALTVDVIDSYSSFRRTSSRVLPKIDQEHRDG 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02191 653 SMART AAA_5 145 283 IPR003593 GO:0016887
Vifa5g02191 653 SMART AAA_5 410 549 IPR003593 GO:0016887
Vifa5g02191 653 Pfam ATPase family associated with various cellular activities (AAA) 414 546 IPR003959 GO:0005524|GO:0016887
Vifa5g02191 653 Pfam ATPase family associated with various cellular activities (AAA) 149 280 IPR003959 GO:0005524|GO:0016887
Vifa5g02191 653 FunFam Cell division control protein 48-B-like protein 364 548 - -
Vifa5g02191 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 608 IPR027417 -
Vifa5g02191 653 Pfam AAA+ lid domain 569 613 IPR041569 -
Vifa5g02191 653 Pfam AAA+ lid domain 304 352 IPR041569 -
Vifa5g02191 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 359 IPR027417 -
Vifa5g02191 653 Gene3D - 98 282 IPR027417 -
Vifa5g02191 653 Gene3D - 364 548 IPR027417 -
Vifa5g02191 653 FunFam ATPase family, AAA domain-containing 2 107 286 - -
Vifa5g02191 653 ProSitePatterns AAA-protein family signature. 517 535 IPR003960 GO:0005524|GO:0016887
Vifa5g02191 653 PANTHER AAA-FAMILY ATPASE 109 639 - -
Vifa5g02191 653 Gene3D - 549 615 - -
Vifa5g02191 653 FunFam spermatogenesis-associated protein 5-like protein 1 548 634 - -
Vifa5g02191 653 Gene3D - 283 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02191 Vifa-Chr5 727659441 727664067 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02191 349 622 Calmodulin-binding Proteins AT3G56690 45.985 2.17e-78 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02191 - - vra:106755317 766.918