Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02190 ATGACTTCCTTCACGTCTGATAGCGATTCGAGCTTCATCTACGACGCGTTTCTGAGTTTCTGTAACATAGACACTGGTAATTCTTTTGCATCATATCTTTATACTGCTCTCACTGTTGCTAGAATCGTTGTTTTCAGGGACGGCGATGAACCTAGAAATCAATATCAGATAATAACAAACTCAGTTGAATACGCAATTGAACGTTCTAGAATTTCTATTATTCTTTTCTCTAAAAATTATGCTGATTCAAATTGGTGCCTGCGAGAGTTGGAGAAGATAACTGAGTGTTATAGAACCATAAGTCAAAGGAGATCTTGTACAAAACTCTTGAAGAAAGACGAATCCAGTGAAGATAGCAACATTACAAGATTTGTCGTGGATTCTAGGAACAGAAGTAAAGATATAAAAAATGTAGTTCAACATGCTGCTCATTTGCTGGACAAGACATACCTGTTTGTTGCTGACCATCCAGTAGGATTAGAGTCACGGGTGCAAGAAGTGATTCAACTACTGAGCAACAAACCATCAGACCATACTCTACTTCTAGGGATATGGGGAATGGGAGGGTTTGGTAAAACAACCCTTGCGAAAGCTATTTATAATCAAATGAGTTGCACTTTTGAGGCTAAGGGTTTCCTCCTAAATTATGGACGGGTCTGGAACCAAAGTAACGGCCAAGTTTCTTTAGACGAACAGTTTCTTTCAGATATCTACAAAATAAAGAAAAATACTTTTGATGTAGAAAAAGCTGTTCTAAAGGAAAGACTTCTCAAAAAAAAGATATTTCTTGTGCTTGATGGTGTTCGTGGTTTGAACCAATACTATGATTTTTGTGGAGCTAGAGGCCTGGAATCATTTGGTCCAGGAAGTAAAATAATTATCACAACTAGAGATCTACTAATACTTCATGCTCTTAACGCTGACCACATATATGAAATGAAAAAAATGGACAAACATGAATCTCTTGAGCTTTTAAGCTGGCATGCGTTCAAGCAACCAAGGCCTATTCAAGGTTTTCCTTTCCTTTCTATAGAAGTTGTTTTGTGCTCTACGGGAATACCGCTGGCTCTTCGTGTCATGGGATCCTTTTTGTTCAATAAAGGATGGGAAGAGTGGAAGACTTTGAACTTGATTGGGGTGGACCACGATGATGTGATTCAGATATTAAAAGCATCTGGTTATCCTGCAAAAACTGAAATTAGTGACCTTGTACAACAAAGCCTTGTAAATATAGATTGCAAGAACAGAATTGATATGCATGATTTGGTATTAGAATTCGGAAGAGAAATTATAAGGAAACAATCACTGGGTATGGATGAGGAAAGGATCTATGATGTGTTTTTGAGTTTCAGAGGGGAAGACAGTCGCCCAAAATTCATTTCACATCTCTATTCTGCCCTTCAAAATGCCGGGATTTATGCTTTCATAGACAATGATGAGATTCAACGAGGAGATCAGATTTCAGTCTCATTGTTAGAAGCAATAAGACAATCTAGGATCTCCATTGTTGTTTTGTCTAAAAATTATACTAATTCAAGACGGTGTATGCTTGAGTTAGAGACCATCATGGACATTGGTAGGACCAGGGGTCTGGTAGTTGTGCCAGTGTTCTATGAGGTAGATCCCTGGGAAGTACGTCATCAAACAAGTAAGTTTGGAGAAGCTCTTCAAGATCTCATATCAAGAATATCAATGGATGAAGACAGGAAGAGGAATTGGGGAACATTACTCCTTGAAATTAGTGGGATGAAGCTTATAATGCTTAGACAATCCTCATTTTACAAGAATGAAAGTGAGGATGTCAACAAAGTAGTAGAACTTGTTACTAATTTGCTAGACAAAACAGATTTATTCGTCGCTGACCATCCAGTGGGGGTAGATTCTCGTGTTCAAGATATTATTCAACTATTGAGTAGTCAAGAATCAAAAGATCCTTTACTGCTTGGAATATGGGGCATGGGAGGAATCGGCAAAACAACAATTGCTAATGGTGCTTATAATAAAATTCGTCATGACTTTGAGGCAAAGAATTTCCTATTTAATGAAAGACTTCGCCAAAAGAGGATATTTCTTGTGCTTGACGATGTGAATAAGTTGGACCAATTGAATGCTTTGTGTGGAAGTCACAAATGGTTTGGTCAAGGAAGTAAAATAATCATCACAACAAGAGATGACGATTTACTTTGTAGGCTTAAAGTAGACTATGTATATAGAGTGAAAGAAATGGACGATCATGAATCTCTTGCACTTTTTAGTTGGCATGCATTCAAGCAGCCAAATCCTATTGAAGCCTTTGCCAACCTTTCTAGAGATGTTGTTAAGTACTCCGGGGGATTGTCACTAGCTCTTCAACTTCTGAAGGAGCTGAAAATTCTCAATCTTAGTCATTCTCATAACTTGAGAGAAACCCCAGACTTTTCATACTTGCCTAATCTTGAAAAGTTAATACTCGAAGACTCTCCAAGTTTGTCTTCGATTTCTTCTACTATAGAACATCTCAGTAAAATTCTATTGATAAATTTGAAAGACTGTACCGGTCTTCGTAAACTTCCAAGAAGCATCTATAAGTTAGAGTCCTTAAAGACTCTCATTGTGTCTGGTTGTACAAAGATTGACAAGTTGGAAGAGGATATAGAACAAATGAAATCTTTAACCACCCTGGTTGCGGAGAAAATCGCTATAACAAGAGTTCCCTTTGCATTAGTAAAGTCAAAAAGTGTTGGATATATTTCTGTGTGGCTATAA 2745 0.3752 MTSFTSDSDSSFIYDAFLSFCNIDTGNSFASYLYTALTVARIVVFRDGDEPRNQYQIITNSVEYAIERSRISIILFSKNYADSNWCLRELEKITECYRTISQRRSCTKLLKKDESSEDSNITRFVVDSRNRSKDIKNVVQHAAHLLDKTYLFVADHPVGLESRVQEVIQLLSNKPSDHTLLLGIWGMGGFGKTTLAKAIYNQMSCTFEAKGFLLNYGRVWNQSNGQVSLDEQFLSDIYKIKKNTFDVEKAVLKERLLKKKIFLVLDGVRGLNQYYDFCGARGLESFGPGSKIIITTRDLLILHALNADHIYEMKKMDKHESLELLSWHAFKQPRPIQGFPFLSIEVVLCSTGIPLALRVMGSFLFNKGWEEWKTLNLIGVDHDDVIQILKASGYPAKTEISDLVQQSLVNIDCKNRIDMHDLVLEFGREIIRKQSLGMDEERIYDVFLSFRGEDSRPKFISHLYSALQNAGIYAFIDNDEIQRGDQISVSLLEAIRQSRISIVVLSKNYTNSRRCMLELETIMDIGRTRGLVVVPVFYEVDPWEVRHQTSKFGEALQDLISRISMDEDRKRNWGTLLLEISGMKLIMLRQSSFYKNESEDVNKVVELVTNLLDKTDLFVADHPVGVDSRVQDIIQLLSSQESKDPLLLGIWGMGGIGKTTIANGAYNKIRHDFEAKNFLFNERLRQKRIFLVLDDVNKLDQLNALCGSHKWFGQGSKIIITTRDDDLLCRLKVDYVYRVKEMDDHESLALFSWHAFKQPNPIEAFANLSRDVVKYSGGLSLALQLLKELKILNLSHSHNLRETPDFSYLPNLEKLILEDSPSLSSISSTIEHLSKILLINLKDCTGLRKLPRSIYKLESLKTLIVSGCTKIDKLEEDIEQMKSLTTLVAEKIAITRVPFALVKSKSVGYISVWL 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02190 914 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 98 IPR035897 -
Vifa5g02190 914 Pfam NB-ARC domain 628 674 IPR002182 GO:0043531
Vifa5g02190 914 Pfam NB-ARC domain 161 376 IPR002182 GO:0043531
Vifa5g02190 914 Pfam NB-ARC domain 682 790 IPR002182 GO:0043531
Vifa5g02190 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 790 IPR027417 -
Vifa5g02190 914 Gene3D - 6 145 IPR035897 -
Vifa5g02190 914 Pfam TIR domain 444 608 IPR000157 GO:0007165
Vifa5g02190 914 Pfam TIR domain 14 98 IPR000157 GO:0007165
Vifa5g02190 914 SUPERFAMILY Toll/Interleukin receptor TIR domain 439 559 IPR035897 -
Vifa5g02190 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 375 IPR027417 -
Vifa5g02190 914 SMART till_3 13 148 IPR000157 GO:0007165
Vifa5g02190 914 SMART till_3 443 583 IPR000157 GO:0007165
Vifa5g02190 914 Gene3D - 438 617 IPR035897 -
Vifa5g02190 914 SUPERFAMILY L domain-like 774 907 - -
Vifa5g02190 914 Gene3D - 618 679 IPR027417 -
Vifa5g02190 914 Gene3D - 146 310 IPR027417 -
Vifa5g02190 914 ProSiteProfiles TIR domain profile. 12 142 IPR000157 GO:0007165
Vifa5g02190 914 PRINTS Disease resistance protein signature 181 196 - -
Vifa5g02190 914 PRINTS Disease resistance protein signature 350 364 - -
Vifa5g02190 914 PRINTS Disease resistance protein signature 255 269 - -
Vifa5g02190 914 PRINTS Disease resistance protein signature 784 800 - -
Vifa5g02190 914 ProSiteProfiles TIR domain profile. 442 612 IPR000157 GO:0007165
Vifa5g02190 914 Gene3D - 315 393 IPR042197 -
Vifa5g02190 914 Gene3D - 680 732 IPR027417 -
Vifa5g02190 914 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 787 885 IPR044974 GO:0006952
Vifa5g02190 914 FunFam Disease resistance protein (TIR-NBS-LRR class) 440 614 - -
Vifa5g02190 914 Gene3D Ribonuclease Inhibitor 733 906 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02190 Vifa-Chr5 727654525 727659272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02190 762 912 WRKY Transcription Factor Family AT5G45050 27.389 3.34e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02190 - - tpra:123891787 877.47