Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02189 ATGGCTTCCTCCACAAACAAGGATTCTGAATCAATATCTGACATTGATATGAATCCATGCTATATCTATGATGTGTTTTTGAGTTTCTGTGATAAGGACGCTGCTAAATCTTTTGCACACAATCTTGATACTGCTCTCACGGTGACTGGATTTGTTGTTTTCAGGGATGACGACAAGCTTAGAAATCAAGATGAGATGATAACACCCTCAGTTCTGCATGCAATTGAAAGATCTAGAGTTTCTATTGTTGTTTTCTCAGAAAATTATGCTGATTCAACTTGGTGTATGCAAGAGTTGGAGAAAATAATGGAGCGTTACCGAACTACAGATCATATGGTTGTGCCTGTGTTCCACGATGATGAAGGTATGCTTGAAGAAGCTTTTAATGATCTTGCAAAAAGAATCTTGAAGAAAGTTGAATCGATGTGCCAAGATTGTAGCATTTCAGGATTTGGTGTGGATTCCAGGAATGAAAGTGAAGATATCAAAAAAGTAGTAGAGCATGTTACTAGTTTGCTAGACGGAACAGATTTATTCGTTGCTGACTATCCAGTGGGGGTAGATTCTCGTGTTCAAGATGTTATTCAACTATTGAATAGCCAAGAATCAAAAGACCCTGTACTAATTGGAATATGGGGCATGGGAGGAATCGGCAAAACAACTATTGCTAGAGCTATTTATAATAGAATTCGTCATGATTTTAAGGCAAATAGCTTCCTCCTAAATGTCTAA 732 0.3757 MASSTNKDSESISDIDMNPCYIYDVFLSFCDKDAAKSFAHNLDTALTVTGFVVFRDDDKLRNQDEMITPSVLHAIERSRVSIVVFSENYADSTWCMQELEKIMERYRTTDHMVVPVFHDDEGMLEEAFNDLAKRILKKVESMCQDCSISGFGVDSRNESEDIKKVVEHVTSLLDGTDLFVADYPVGVDSRVQDVIQLLNSQESKDPVLIGIWGMGGIGKTTIARAIYNRIRHDFKANSFLLNV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02189 243 Gene3D - 181 243 IPR027417 -
Vifa5g02189 243 Pfam TIR domain 23 169 IPR000157 GO:0007165
Vifa5g02189 243 Gene3D - 19 180 IPR035897 -
Vifa5g02189 243 SMART till_3 22 172 IPR000157 GO:0007165
Vifa5g02189 243 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 243 IPR044974 GO:0006952
Vifa5g02189 243 Pfam NB-ARC domain 189 234 IPR002182 GO:0043531
Vifa5g02189 243 ProSiteProfiles TIR domain profile. 21 173 IPR000157 GO:0007165
Vifa5g02189 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 240 IPR027417 -
Vifa5g02189 243 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 123 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02189 Vifa-Chr5 727620333 727621918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02189 23 230 WRKY Transcription Factor Family AT4G12020 27.523 8.51e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02189 - - tpra:123891787 308.531