Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02187 ATGGGAGGGATTGGCAAAACAACCATTGCTAAAGCGGCTTATAATAAAATTCGTCGCGACTATGAGGCAAAGAGCTTCCTCCTAAACGTCAGGGAATTTTGGGAACAAGATAATGTCCAAGTTTCTTTACAGCAACGACTTCTTTCAGATATCTACAAAACAACAAAAATAAAGATTGATACAGTTGAATCGGGAAAAATGATATTGCAAGAGAGACTTCGGCAAAAGAGGATATTTCTTGTGATCGACGATGTGAATAAAATGGACCAATTGAAAGCTTTGTGTGGAAGTCACGAATGGTTTGGTCAAGGAAGTAGAATAGTCATCACTACAAGAGACAATGATTTACTTCGGAAGCTTAAGGTGGACCATGTGTATAGAATGGAAAAAATGAACGACGATGAATCTCTTCTACTTTTTAGTTGGCATGCCTTCAAGGAACAAAGTCCTATTGATGATTTTGCTGACCTTTCTAGAGATTTTATTAAGTACTCTGGAGGGTTGCCGCTAGCTCTTCAAGTCATTGGGTCCTTTTTGTTGACTAGGCGAAGCAAAATAGAGTGGAAGAGTGTATTGGAGAAACTAAAATGCATTCCCAATGAGGAAGTGTTAGAAAAACTTAGAATAAGTTTTGACGGTTTAAGTGATTATGATATGAAAGAAATATTCCTTAATATTGCTTTTTTCTTTATTGGGATGGACAAAGAAGATGTGACTAAAATATTGGAAGACTGTGGGCATTATGCATGTATTGGAATAAGTGTCCTTGTTCAAAGAAGTCTTGTAACTGTTGACAGCAAGAACAAGATTGGAATGCATGAATTGCTACAAGACATGGGAAGAGAGATCGTAGGTAAGATATCAAGAGAGGGAAACAAGAATCCTAGTAGGTTATGGCGTTACAAGGACGTGAATCATACATTGTCAAAGGATAGTAAAACTTTAGATGTCAAAGGACTGACTTTAAATATGTCAAGAATGGATTCCACAACTTATTTGGACTCTAAAACATTTGAGAAGATGGATAAGCTTAAATTACTTCAACTTGCTGGCGTACAATTTAATGGAGATTACAAATCTCTTTCAAGAGAACTTAGATGGCTTTCTTGGCATGGGTTTCCTTTCAAATATATACCACCAGATTTTTATCAAGAACGTTTAGTTTCTGTTGACTTCAAATATTCCAATCTGGAACGAGTATGGATCAAGTCCCAGTTTTTGGCGGGGCTGAAATTTCTTAATCTTAGCCACTCTCACAACTTGAGACAAACTCCAGACTTTTCAAACTTGCCAAATCTTGAAAAGTTGATATTCAAAGATTGTCCAAGATTGTCCTCAATTTCTTCTACTATAGGACATCTCAAGAAAATTCTTTTGATAAATTTGAAAGACTGTACAGGCCTTTGTGAACTTCCAAGAAGCATCTATAAATTGAAATCATTAAGAACTCTAATTATGTCTGGCTGTACAAAAATTTTCAAGTTGAAAGAGGAAAGAGGATATATAACAGATGATATCTTGTCCCTAGTTCAAACATTTGTAGGCACGTCATCTCTTGAATTCTTAGATGAACAAGAAAATAGTTTCTATGGTCTGCCATCTGCTTTTAAACAAATTTCGAATCTTCAATATCTTTGGTTGAAATGCGTGTCAGACACTCAACTAAATCAAACTCTAGCAAGTATTCTCGATAACTTACAAACCCAAAGTTGTGAGGAGTTGGAAGCAATGCAAAACACACCTCAATCCTCAAATTTTGTGACTTCGGAATCAACTCGATATTTCAGTCAAGTTCGAATTTCAAGCTCACAAAAATCCTTGGCATCGCTTTTGATTCAAATGGGAATGAACTGCCATGTCACTAATACTCTTAGAGAAAACATTTTACTGAAAATGCCTCCAAACGGGTCTGGTTTTCTCCCCGGTGATAATCATCCTGATTGGCTAGCCTTCAATGAAAACGATTCTTCTGTAAATTTTGAAGTACCTCAGGTGGATGAGCGTAGTTTGAGAACAATCATGTGCATTGTCTATTCTTCTTCTCCAGATGATATTGTATCAGAAGGCCTTAAAGTTTTGCTGCTGATAAATTGCACAAAGAAAACCATTCAGCTGTATAAGAGAGACGCATTATTAGCCTCCTTTGATGAAGAAGAGTGGCAGAAAGTAGTATCAAGTACAGAACCAGGTGACATAATGAAGCTTATTGTTGTATTTGAAAGCAAAATTGTTGTGAAGAAGACAACAGTTTATCTTATTTATGATGAACCAACTGACGAAAAGACAAAGCAATGCTGTGAACTAGATAAGAATATTATTGCTTCTAGTGGTGATGGAAATATATTCGGTAGACTCTTGTTGAGACTTCCTTCCCTTGTTCGAACAGTTCTGCTTTCTCGATCTTTCTGTTTCAGGAAATGGGTTCCCAAAGCTCTCAAGGTTTCTGCAATCCAGTATCAAGGGGCGGAATTCCTTTGGGTGTTGTACAACATGATTTTAAATCGCTGTCGTCGTGGCTAA 2520 0.3671 MGGIGKTTIAKAAYNKIRRDYEAKSFLLNVREFWEQDNVQVSLQQRLLSDIYKTTKIKIDTVESGKMILQERLRQKRIFLVIDDVNKMDQLKALCGSHEWFGQGSRIVITTRDNDLLRKLKVDHVYRMEKMNDDESLLLFSWHAFKEQSPIDDFADLSRDFIKYSGGLPLALQVIGSFLLTRRSKIEWKSVLEKLKCIPNEEVLEKLRISFDGLSDYDMKEIFLNIAFFFIGMDKEDVTKILEDCGHYACIGISVLVQRSLVTVDSKNKIGMHELLQDMGREIVGKISREGNKNPSRLWRYKDVNHTLSKDSKTLDVKGLTLNMSRMDSTTYLDSKTFEKMDKLKLLQLAGVQFNGDYKSLSRELRWLSWHGFPFKYIPPDFYQERLVSVDFKYSNLERVWIKSQFLAGLKFLNLSHSHNLRQTPDFSNLPNLEKLIFKDCPRLSSISSTIGHLKKILLINLKDCTGLCELPRSIYKLKSLRTLIMSGCTKIFKLKEERGYITDDILSLVQTFVGTSSLEFLDEQENSFYGLPSAFKQISNLQYLWLKCVSDTQLNQTLASILDNLQTQSCEELEAMQNTPQSSNFVTSESTRYFSQVRISSSQKSLASLLIQMGMNCHVTNTLRENILLKMPPNGSGFLPGDNHPDWLAFNENDSSVNFEVPQVDERSLRTIMCIVYSSSPDDIVSEGLKVLLLINCTKKTIQLYKRDALLASFDEEEWQKVVSSTEPGDIMKLIVVFESKIVVKKTTVYLIYDEPTDEKTKQCCELDKNIIASSGDGNIFGRLLLRLPSLVRTVLLSRSFCFRKWVPKALKVSAIQYQGAEFLWVLYNMILNRCRRG 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02187 839 Gene3D Ribonuclease Inhibitor 306 600 IPR032675 -
Vifa5g02187 839 PRINTS Disease resistance protein signature 165 179 - -
Vifa5g02187 839 PRINTS Disease resistance protein signature 476 492 - -
Vifa5g02187 839 PRINTS Disease resistance protein signature 72 86 - -
Vifa5g02187 839 SUPERFAMILY L domain-like 327 611 - -
Vifa5g02187 839 Gene3D - 130 215 IPR042197 -
Vifa5g02187 839 Gene3D - 1 125 IPR027417 -
Vifa5g02187 839 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 591 IPR044974 GO:0006952
Vifa5g02187 839 Pfam NB-ARC domain 1 196 IPR002182 GO:0043531
Vifa5g02187 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 225 IPR027417 -
Vifa5g02187 839 SUPERFAMILY "Winged helix" DNA-binding domain 202 308 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02187 Vifa-Chr5 727599029 727602952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02187 1 583 WRKY Transcription Factor Family AT5G45050 29.032 2.00e-68 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02187 - - mtr:11408937 1185.63